Clupea harengus (Atlantic herring): 105911129
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Entry
105911129 CDS
T09045
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03273
Virion - Lassa virus and SFTS virus
char04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
105911129 (pcdh20)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
105911129 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
char01009
]
105911129 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
char04515
]
105911129 (pcdh20)
Protein phosphatases and associated proteins [BR:
char01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
105911129 (pcdh20)
Cell adhesion molecules [BR:
char04515
]
Cadherins
Protocadherins
105911129 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_Cad99C_N
Ig_CLSTN
Cadherin_CELSR2_9th
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
105911129
NCBI-ProteinID:
XP_031442962
Ensembl:
ENSCHAG00000015379
UniProt:
A0A6P8H5J6
LinkDB
All DBs
Position
20:complement(2112334..2115619)
Genome browser
AA seq
857 aa
AA seq
DB search
MGDGICDNMNAAVLLQKVLFVVVLKQAMYSALSLRVQEEQQEGVHIGTIGRDYPGPYRLL
DQDYIHLHESTGDLYTTKQIIDREIVCPPQQDGDCTITLYAVVGPQNITEVIEIVLIVED
INDNAPLFPESVICFSVAEDESVGASFILDGEAHDVDSDINGQISYHLQNYSEFFAVIER
GPALVLVLRRELDREIQDNHQMTLVAVDHGLRPLSGTATLMVTVTDVNDNCPEFDPDSPY
SATISGNTSKGSVIAQVKATDRDVGHNAAVDYSFSWKNSDKAMALFQLDRHSGLITLADD
VRADSPDEFVLNVLASDPLCSPRSPPATSEVTVSVTPVTGPEPVIKIRFIAEHENQTILL
QENTPPAALALLELEDGVGGCALSIEGDVPFSLKPQTQNGNYLLSSSKPLDFEMLSEYHV
SVVITNAQGKRLYYKKEIKVLLVDVNDNAPRFNQTHYQIVLEENNKPGAGILQVRAFDPD
SQHNGRVFYRLSRNTSPIFHVDRVTGELSVSASLDREQQESYTLTVLARDSGIPPLETSA
SVSVHVLDQNDNVPSFLTPHFIFFVPENIPRLAPVGKIGVTDTDKGDNGEVEVRVFNGTG
PFVMDNVQGTLRCTEELDREERDRYEFFLVALDRGSPSLSSSARVTIFVEDMNDNQPQVI
LPSSNLTCLTVSPSTPAGSMVTRIYAMDTDSGINSDITYHLVGSEPAQNCPFQIDPHSGN
VSLAQHLMGQDYGMHHLFIVVSDGGKPIPLQTTVWVNLLVNETLAPCRLDSVPKSLPSRL
PRPTMPNQCETSEQYGQNPKLILLIGLGMVVLSLCLLSIAVGLFVKQRNMRHINVNVKAC
EIIPLRDKHSSDHWEKD
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatgggatttgcgataacatgaatgccgctgtcctactgcagaaagtgcttttt
gtggttgttttaaagcaagcaatgtacagtgcactgagtcttcgcgtccaagaagaacag
caggaaggcgtccacattggcacgattggcagagattatccgggcccataccggctgctt
gatcaagactacatacatctacatgaaagcacgggggacctgtatactaccaaacagatt
atcgatagagagattgtgtgccctcctcagcaagatggtgattgcaccatcactctatat
gctgttgttggcccgcagaacatcacagaagtcatagagatcgtgctgattgtagaggac
atcaatgataatgcccccctcttccctgagagtgttatatgcttcagtgtggcagaggat
gaaagtgtcggggcaagtttcatcttggatggtgaagctcacgatgtggattctgacatc
aacgggcagattagctaccatttgcaaaattacagtgaattctttgcagtgatagagagg
ggacccgcgcttgtgcttgttttacgaagggaactggaccgtgaaattcaggataaccat
caaatgactctcgttgctgtagaccatggtttgagaccactcagtggcactgccacactg
atggttactgtgactgatgtcaatgataattgcccagagtttgatccagacagtccctat
tcagccaccatcagtggaaacacatccaagggctctgtcattgcccaggtgaaggccaca
gacagagacgttggccacaatgccgctgtagactattcttttagctggaagaactcagat
aaggcaatggccttgttccagctggacagacacagtggactgatcaccctagctgatgat
gttcgcgccgacagcccggacgagtttgtgctgaacgtcctcgcgagcgacccactctgc
tccccccgctccccccctgcgacctctgaggtaaccgtatccgtgacgccggtgacaggg
cccgagccggtgatcaagatcaggttcatagcggagcatgaaaaccaaacgatactgtta
caggagaacacgccgccggcagccctggcccttttagagctggaagacggcgtcggcggc
tgcgcactctctatagagggagacgtgccattttccctaaaaccacaaactcagaatggt
aactatctcctttcatcatcaaagccattagactttgaaatgctctcagaataccatgtt
tctgttgtcatcacaaacgcccagggcaagcgcctgtattataagaaagagatcaaagta
ctgctggttgatgtgaatgataatgccccgcggttcaatcaaacacactatcagatagtt
ctggaggagaacaataagccaggggcaggcattcttcaggtcagggcgtttgatccagac
agtcagcacaatggaagagtattttacagactgagcaggaacacttccccaatcttccac
gttgaccgcgtgacaggcgagctgtcggtgtcggcctctctcgaccgagagcagcaggag
tcttacactctgactgtgctggcccgagacagtggcatcccaccgctggagacctctgcg
tctgtgtctgtgcacgtgctggaccagaatgacaacgtgccgtccttcctcacgcctcac
ttcatcttcttcgtgccggagaacatccctcgcttggcgccggtgggaaagatcggggtg
acggacacagacaaaggggacaacggggaggtggaggtgcgcgtgtttaacggcaccggg
ccttttgtcatggacaacgtccaggggacgctgcgctgcacggaggaactggaccgggaa
gagcgggacaggtacgagttcttcctggtggcgctggaccggggcagcccctcgctgtcc
tccagcgccagggtcacgatcttcgtagaggacatgaacgacaaccagcctcaggtgatc
ttgcccagcagcaacctcacctgcctcaccgtgtcaccgtccaccccggctggctcaatg
gtcacccggatctacgccatggacacggactcggggatcaactcggacatcacctaccac
ctcgtcggcagtgagccggcacagaattgcccattccagatcgacccgcactcgggcaat
gtttcgctcgcccagcatctgatgggccaggactatgggatgcaccacctcttcattgtg
gtgagcgacgggggaaagccaatccctcttcagaccacagtgtgggttaacttgctggtc
aacgagacgctggcgccgtgtcgcctagacagtgttccaaagagcttgccaagtagactc
ccacgtcccacgatgccaaatcagtgtgagaccagtgagcagtatggtcaaaatcccaag
ttgatactactcattggcttaggcatggtcgttttatctctgtgtctcttatcgattgcc
gtggggctgtttgtaaagcagagaaacatgaggcatataaatgtaaatgtaaaggcctgt
gaaattatccctctgagggacaaacatagctctgatcactgggaaaaagactga
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