Clupea harengus (Atlantic herring): 105911292
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Entry
105911292 CDS
T09045
Symbol
tmtops3a
Name
(RefSeq) teleost multiple tissue opsin 3a
KO
K04256
c-opsin
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
char01009
]
105911292 (tmtops3a)
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
char04030
]
105911292 (tmtops3a)
Protein phosphatases and associated proteins [BR:
char01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
105911292 (tmtops3a)
G protein-coupled receptors [BR:
char04030
]
Rhodopsin family
Vision
Opsin
105911292 (tmtops3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srsx
7TM_GPCR_Srw
7TM_GPCR_Srx
DUF2975
Motif
Other DBs
NCBI-GeneID:
105911292
NCBI-ProteinID:
XP_012695542
Ensembl:
ENSCHAG00000014027
UniProt:
A0A6P3WCX7
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All DBs
Position
20:4429188..4437420
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AA seq
325 aa
AA seq
DB search
MLVHIWSLNLSILESFSVNQSYNDSTEDPLFPHRLSRTGHTVVAIFLGIILFFGFFNNLL
VLLVFAKFRCLWTPINLILLNISVSDILVCIFGTPFSFAANVYGRWLIGDLGCQWYGFAN
SLFGIVSLVSMSILSYERYTTLLCPTKADLSDFRKAWLWVAGSWLYSLMWTLPPLLGWSH
YGPEGPGTSCSVEWRRRSVGGMSYVVCLFVFCLALPLLLMLLCYIRILQFIREMSRVKYK
AAQRRQNHILRMVIIMVSCYLLCWMPYGLMALVATFGETGLVTSVMSVVPAVLAKSSTVL
NPIIYVLFNDQVGPPFHSAIQISPC
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgttagttcacatttggagtttaaatttgagcattttggagagtttcagtgtaaaccaa
agctataatgatagcactgaggatcctcttttcccacatcgtctgagtaggaccggccac
accgtagtagcaattttcctcggaattatcctgtttttcggattctttaacaatcttctc
gttctgttggtattcgcaaagtttcgttgtctctggacacccatcaacctcatcctgctg
aacatcagcgtcagtgacatacttgtgtgcatttttggcacgccattcagttttgctgcg
aatgtctacgggaggtggctcatcggggacctaggttgccagtggtatggtttcgccaat
tcgcttttcggcatcgtgtccctggtgtccatgtccatcttgtcttacgagcgctacacg
acattgctgtgccccaccaaggctgacctgtcggacttccgtaaagcctggctgtgggtg
gctggctcctggctgtactcactgatgtggacgctgcctcccctcctcggctggagccac
tacgggccggaggggccgggcacctcctgctccgtggagtggcgtcggcgctcggtgggc
ggcatgtcgtacgtggtgtgcctcttcgtcttctgcctggcgctgcccctgctgctcatg
ctgctgtgctacatcaggatccttcagttcatcagggagatgagtcgggtgaagtacaaa
gcggctcaacggcggcaaaaccacattctgcggatggtcatcatcatggtgtcctgctat
ctgctgtgctggatgccctacggcctcatggccctggtggccaccttcggagagacgggt
ctggtcacgtctgtgatgagcgtggtgcctgctgtcctggccaagagcagcaccgtctta
aaccccatcatctatgtgctcttcaatgaccaggttggcccgcctttccattcagccatt
cagatcagtccttgctag
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