Clupea harengus (Atlantic herring): 105911296
Help
Entry
105911296 CDS
T09045
Symbol
lrp5
Name
(RefSeq) low-density lipoprotein receptor-related protein 5 isoform X4
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04150
mTOR signaling pathway
char04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
105911296 (lrp5)
04150 mTOR signaling pathway
105911296 (lrp5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105911296 (lrp5)
Membrane trafficking [BR:
char04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
105911296 (lrp5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
Vgb_lyase
DUF5050
SGL
EGF_LRP2
EGF
cEGF
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
105911296
NCBI-ProteinID:
XP_012695544
Ensembl:
ENSCHAG00000025848
UniProt:
A0A6P3WDG7
LinkDB
All DBs
Position
3:4704159..4755196
Genome browser
AA seq
1624 aa
AA seq
DB search
MELKLGALAMEVLLLKLLLYSCLFVVHGSPLLLFANRRDVRLVDAEGPRAESAVVVSDLE
DAAAVDFLYSEGLIFWTDVSEEAIKQTYYNQSSNSVKEATLGTGQKVVVSGLESPDGLAC
DWLGRKLYWTDSETNRIEVANLDGTSRKVLFWQDLDQPRAIALDPAHRYMYWTDWGEEPR
IERAGMDGSSRKIIVEVDIYWPNGLTIDLDEQKLYWADAKLSFIHRANLDGSARETVVEG
TLTHPFALTLSDETLYWTDWQTRSIHACNKHSGDKRREILSGIHSPMDIQVLSQQRQPNF
QTPCSNGNGGCSHLCLLSPLPPFHSCACPTGVKLKEDGKTCRPGAEEVLLLARRTDLRRI
SLDLPDFTDIVLQVSDIRHAIAIDYDPVDGHVYWTDDEVKAIRRSRIDGSEAQTLVTTEV
NHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGSSRRILISENLVEPRAIVLDPVNGYMYW
TDWGELPKIERANLDGSDRFILLNTSLGWPNGLAIDHAAGKLYWGDAKTDKIEVINIDGT
GRMTLLEDKLPHIFGFTLLGDFIYWTDWQRRSIERVNKHTAEREIIIDQLPDLMGLKATK
VTETFGTNGCADTNGGCSHLCFHRPQGLRCACPMGLELLSDLRTCVVPEAFLLFTNRADI
RSISLGTNSHDVAIPLTGVKEASALDFDVLENRIYWTDVSTKTISRAFMNGSSVEHVIEF
GLDYPEGMAVDWMGRNVYWADTGTNRIEVARLDGQYRQVLVCKDLDNPRSLALDPANGYM
YWTEWGGRPRIARAHMDGSNIMTLVEKVGRANGLTIDYIDQRLYWTDLDTCMIESSNMQG
QDREIVADDLPHPFGLTQYSDYIYWTDWNLRSIERADKRSGLNRTVVQHHLEYGMDIRVF
HSSRQDGSNECSQNNGLCSHLCLASPSGAQCRCASHYTLDSNGRNCTSPSSFLLFSQKAS
ISRMVLGEQSPDIILPIHVQRSVRAISYDPLEYLVYWVDGRGNIRRARDDGTQSFSVVST
TPVSHQLDIVKLPHDLSLDPYSRTVYWTCETTNTINIHRMDGRSVGVVIRDDVDKPRAIV
VNAEKGYMYFTTVQDRSAKIEGASLDGTERESLFTTSLIRPVALALDNKLGKLFWVDADL
KRIESSDLSGANRIVLQDNILQPVGLTVLGDHLYWIDRQQQMIECIDKLTGEKRTRIQGR
IVYLTGIHAVEDMDPNELAVHPCSRDNGGCSHICITKGDGTPRCSCPMHLVLLQNLLSCG
EPPTCSSEQFTCATGDIDCIPMAWRCDGFAECDDSSDEENCPVCSSLQFQCDKGQCISAQ
LRCNGEPDCADNSDEQDCETICRPNQFRCSNSLCILKKQQCDSYSDCADNSDEMYCDSDF
MPPPGEGLPTHTSTVVPVICIILSVFVMGGMYFVCQRMVCRCYKGPNGAFPHEYISGTPH
VPLNFIAPSNSQHGTFTGISCGKSMMSSVSLMGSSSSGAPLYDRNHVTGASSSSSSSTKG
VFYPQILNPPPSPATDRSLYNAEIFYSSNSPSTTRSYRPYMMRGMAPPTTPCSTDVCDSD
YTTSRWKSNKYYMDLNSDSDPYPPPPTPRSQYLSAEESCPPSPSTERSYFHLCPPPPSPC
TDSS
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaagctgggcgcccttgcaatggaggttttgttgctgaaattactgctttac
agttgcctgttcgtggtccatggttcccccttgctgctctttgccaaccggcgagatgtg
cgtctggtggatgcggagggccctcgagctgaatcggcggtggtggtcagtgacttggag
gacgcggcggccgtggacttcctctactctgagggtctgatcttctggacagatgtcagc
gaggaggccatcaagcagacctactacaaccaatctagcaactcagtaaaagaagcaacg
ttgggcactggtcaaaaggtggtggtgtcaggtcttgaatcccccgatggactggcatgc
gattggctgggacgtaaactctactggacggactctgagaccaaccgcattgaggtggcg
aacctggacgggacgtcgcggaaggtgttgttttggcaggacctggaccagcccagggcc
atcgcactggacccagcccaccggtacatgtactggacagattggggggaggagcctcgc
attgaaagggcgggcatggacggcagcagcaggaagatcatcgttgaggtggacatctat
tggcccaacggcctcaccatcgacctggacgagcagaagctctactgggccgacgccaag
ctcagcttcatccaccgggccaacctggacggctctgcacgggagactgtggtggagggc
accctgacccatccctttgccctcaccctctccgatgagacgctgtactggacggactgg
cagacgcgctccatccacgcctgtaacaagcactccggggacaagaggagagagatactc
agtggcattcactcacccatggacatccaggtcctttcccaacaaagacagccaaacttt
caaaccccgtgcagtaatgggaacggtggctgctcccacctctgcctgctgtcccccttg
ccgccgtttcacagctgtgcctgccccacgggagtcaagctcaaggaggacggcaagacg
tgtcgaccaggagctgaggaagtcctgctgttggcgcgccgcacagacctgcggcggatc
tctctggatctgcccgacttcactgacatcgtgctgcaggtcagtgacatccgccacgcc
atcgccatcgactacgaccctgtggacggccacgtgtactggacggacgacgaggtcaag
gccatccgccggtcccgcatagatggcagtgaggcccagacgttggtgaccacggaggtc
aaccaccctgatgggatcgcggtggattgggtggcccgcaacctttattggacagacacg
ggcacggaccggattgaggtgacccggctcaatgggtcgtcgcgacgcattctgatctcc
gagaacctggtggaaccacgggccatcgtgctagaccctgtcaatggttacatgtactgg
accgactggggtgagctgcccaaaattgaacgagcaaatcttgatggaagcgaccgtttc
atccttctaaatacctccttggggtggcccaacggtctggctatcgaccacgctgcagga
aagctgtactggggtgatgcaaagaccgataaaattgaggtgatcaacatcgatggcacg
gggaggatgactctgctggaggacaagctgccgcacatcttcggcttcacgctgctcggc
gacttcatctactggacggactggcagaggcggagcatcgagcgggtcaacaagcacacc
gctgagcgggagatcatcatcgaccagctgcccgacctcatgggcctcaaggccaccaaa
gtcactgaaacctttggaacaaatggctgtgcggacaccaacggcggctgcagccacctt
tgtttccaccggccgcagggcctgcgctgcgcctgccccatgggcctggagctgctgagc
gacctgcgcacctgcgtggtgcccgaggccttcctgctcttcaccaaccgcgcagacatc
cgcagcatctccctgggcaccaacagccacgacgtggccatccccctcacgggcgtcaag
gaggcctccgccctggacttcgacgtgctcgagaaccgcatctactggaccgatgtcagc
acgaagaccataagccgagccttcatgaacggctcctcggtggaacacgtgattgagttc
ggtttggactacccggagggcatggccgtggactggatgggccgtaatgtctactgggcg
gacaccggcaccaaccgcatcgaggtggcccgcctcgatggccagtaccggcaggttctg
gtctgcaaagatttagacaacccacgttccctagccctcgacccagctaatggctacatg
tactggacagagtggggtggcaggcccaggatcgccagggcgcacatggatgggagcaac
atcatgaccctggtggagaaggtgggccgcgccaatggcctcactatcgactacatcgac
cagcggctctactggactgacctggacacgtgcatgattgagtccagtaacatgcaaggt
caggacagggagatcgtggccgatgacctgccccatcccttcggcctgacgcagtacagc
gactacatctactggacggactggaacctgcgcagcatcgagcgggcggacaagcgcagc
ggcctgaaccgcacggtggtgcagcaccacctggagtacggcatggacatccgggtgttc
cactcctcgcggcaggacggctccaacgagtgctcgcagaacaacggcctctgctcccac
ctgtgcctagcctcgccctccggggcgcagtgccgctgtgcctcccactacacgctcgac
tccaacggacgcaactgcacttctccctccagcttcctgctgttcagccagaaggcctcc
atcagccgcatggtgctgggggagcagagcccagacatcatcctgcccatccatgtgcag
cgcagcgtccgtgccatcagctacgacccactggagtacctcgtgtactgggtggatggc
cgcgggaacattagacgggcacgcgatgacggaacccagtcgttctccgtggtgtccacc
actcccgtctcccaccagttggacatagtcaagttaccccacgatctgagcctggaccct
tacagccgcacggtgtactggacctgcgagaccaccaacactatcaacatccaccggatg
gacggacgctccgtgggcgtggtcatccgagacgacgtggacaagccccgcgccatcgtg
gtcaacgctgagaaagggtacatgtacttcaccacagtgcaggatcgctcggccaaaatt
gagggtgcgtctctggacggcacagagcgagagtcccttttcaccaccagcctgatcagg
ccagtggccctggccctcgacaacaagctgggcaagctcttctgggtggacgccgacctg
aagcgcatcgaaagcagcgacctctcgggtgccaatcggattgttcttcaggacaacatc
ttgcagcctgtgggtctgaccgtgctgggcgaccacctgtactggatcgacagacagcag
cagatgatcgagtgcatcgacaagctgacgggagaaaagcgcacacgcatccagggccgc
attgtctacctgaccggcattcacgccgtggaggacatggacccaaatgagctcgcggtc
cacccgtgttcccgtgataatggtggctgttcccacatctgtatcaccaagggtgacgga
acgccacgttgctcctgccccatgcatctggtgctgctgcagaacctcctctcctgtgga
gagccccccacctgctcctcggagcagttcacctgtgccaccggagacatcgactgcatc
cccatggcgtggcgctgcgacggctttgctgagtgcgacgacagcagcgacgaggagaac
tgccccgtctgctcgtccctccagttccagtgcgacaagggccagtgcatcagcgcccag
ctgcgctgcaacggcgagcccgactgcgcagacaactctgacgagcaggactgtgaaacc
atctgccggccaaaccagttccgctgcagcaacagtctgtgcattcttaagaagcagcag
tgcgactcctactcagactgcgctgacaactcagacgagatgtactgcgattcagatttc
atgccccctcccggtgagggccttcctacccataccagcacggtcgtgcccgtcatctgc
atcatcttgtccgtgttcgtgatgggtggcatgtatttcgtgtgccagcgcatggtgtgc
cgctgctacaaggggcccaacggggccttccctcacgagtacatcagcggcacgccccat
gtgccactcaacttcatcgcccccagcaactcccagcacggcaccttcacagggatctcc
tgtgggaagtcaatgatgagctcagtgagcctgatgggcagcagcagcagtggtgccccc
ctctacgacaggaaccatgtcacaggggcctcttccagcagttcctctagcaccaaagga
gttttctaccctcagattctcaacccgcctccctcgccagccacagaccgctcactttac
aacgctgagatcttctattcttcaaacagtccctccacaaccaggtcttacagaccctac
atgatgcgaggcatggccccacccacgacgccgtgcagcacggacgtgtgcgacagcgac
tacacaaccagccgctggaagagcaacaaatactacatggacctcaactcagactctgac
ccctaccccccgccccccacgccgcgcagccagtacctgtctgcggaggagagctgcccc
ccgtcgccctccaccgagcgcagctacttccacctctgcccccctccaccctcaccctgc
acagactcctcgtga
DBGET
integrated database retrieval system
