Clupea harengus (Atlantic herring): 105911439
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Entry
105911439 CDS
T09045
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1
KO
K10602
E3 ubiquitin-protein ligase NHLRC1 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105911439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105911439
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105911439
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105911439
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_UBOX
zf-RING_5
zf-C3HC4
RING_XB3-XBAT31
Zip
Motif
Other DBs
NCBI-GeneID:
105911439
NCBI-ProteinID:
XP_012695688
Ensembl:
ENSCHAG00000010758
UniProt:
A0A6P3WD26
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Position
11:complement(695399..697966)
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AA seq
511 aa
AA seq
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MAACASGSLQVLLGALHTHLLECKVCMERFSSSADEEPDRRPLALGCGHVLCAECVRVCV
RVCVCAECVRLLSSSSSSRRTLHCPFCRLPSDPARVSACRALADLQELLQEHQSRPTASP
APPGGGEDARGGPQDEALDGRALRLVRAFGGWGTLMNPTGVALFSSGALAVVHDGKERVL
VFGPQGRRLHGFGQRGGAVGAGLTHPLGVAVLPDGQVAVSDAGDAALKVFTSRGGAVGEA
RGDWLRLPWGVAAASGGGRGVLVADAQEGALFRLEVDSARGGELRGRRVVLEGLQNPRAV
ACCPRTGHIAVVEHLWGNRHTHTSQHTHTSEHTHTPEHTHTPEHTHTSQHINPPEHTHSS
KHTHTPEHTLILEHTHTSKHAHTTGHTQSGTHTHTHPTRLTLYSSDLTLLYQIDSFGLGL
RTGSPAPPPCLTAVTFDSAGHLIAADARSGVVWSLGRPWEDRPLALTPLVSDGLVRPVGL
AVTGDTLVVLDSGDHAVKMYSSQPDLYSAPY
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctgtgcttccggctccctgcaggtcctcctgggcgccctgcacacacacctg
ctggagtgtaaggtgtgtatggagcgcttcagttccagcgcagacgaggagccggaccgg
cggcccttggcccttggctgcggtcacgtgctgtgtgccgagtgtgtgagagtgtgtgtg
cgtgtgtgtgtgtgtgccgagtgtgtgcgcctcctcagctcctcctcctccagccgccga
acgctccactgccccttctgccggctgcccagcgaccccgcccgcgtctccgcctgccgg
gccctcgccgacctccaggagctgctgcaggagcaccagagccgccccactgcctcgcca
gcgccacccggtggtggggaggatgcccgaggcgggccgcaggacgaggcactggatggg
agggcgctgcgcctggtgcgggcgtttggggggtggggcacgctgatgaaccccacgggc
gtggcgctcttcagctcgggggcgctggccgtggtgcacgatgggaaggagagggtgctg
gtcttcgggccgcaggggaggcgtctgcacgggttcggccagaggggcggggctgttggg
gcggggctgacacacccgctgggtgtggccgtgcttcctgacggacaggtggcggtgagc
gacgccggagacgccgcgctgaaggtgttcacgtcccggggcggagccgtcggggaggca
cgtggtgattggttgcggctgccgtggggtgtggcggcggcgagcggcggcggcagaggt
gtgctggtggctgatgcccaggagggggcgctgttccggctggaggtggactccgcccgc
gggggggagctcaggggcaggagggtggtgctggaggggctacagaacccacgagccgtc
gcctgctgcccccgcacagggcacatcgctgtggtggaacacctctggggcaataggcac
acacacaccagccagcacacacacacctcagagcacacacacaccccagagcacacacac
accccagagcacacacacaccagccagcacataaaccctccagaacacacgcatagcagc
aagcacacacacaccccagaacacacgctcatcctggagcacacacacaccagcaaacat
gcacacaccactggacacacacagagcggcacacacacacacacacaccccactcggctg
acgctctacagcagtgacctcacgctgctttaccagatagactccttcggcctcggcctc
cgcacaggaagccccgcccccccgccctgcctgaccgcggtgacctttgactctgcgggt
cacctgatcgccgctgacgcccgctcaggtgtggtctggagcctcggcaggccgtgggag
gaccggccactcgccctgaccccgctggtcagcgacggactcgtccggccggtgggcttg
gcggtgaccggagacactctcgtcgtactggacagcggagaccacgcagtgaagatgtac
tccagccagccagacctctactcagccccatactaa
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