KEGG   Clupea harengus (Atlantic herring): 105911617
Entry
105911617         CDS       T09045                                 
Name
(RefSeq) TATA-box-binding protein
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    105911617
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:char03000]
    105911617
   03021 Transcription machinery [BR:char03021]
    105911617
Transcription factors [BR:char03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    105911617
Transcription machinery [BR:char03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     105911617
  RNA polymerase III system
    TFIIIB
     105911617
  RNA polymerase I system
    SL1/TIF-1B
     105911617
SSDB
Motif
Pfam: TBP ANAPC_CDC26
Other DBs
NCBI-GeneID: 105911617
NCBI-ProteinID: XP_012695895
Ensembl: ENSCHAG00000001081
UniProt: A0A6P3WDK5
LinkDB
Position
13:complement(9919843..9930331)
AA seq 302 aa
MEQNNSLTPFAQGLASPQSVMTPGPPIFSPMMPYGTGLTPQPVTNTNSLSALEEHQRLQQ
QQQQQQASAQQGGVAGTSGQTPQLYHSQAITTTTSLPGNTPLYNPLTPMTPITPATPASE
SSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSG
KMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH
QQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRK
TT
NT seq 909 nt   +upstreamnt  +downstreamnt
atggagcagaacaacagtttgaccccttttgcccaaggactcgcctctccccagagtgtc
atgacacctggtcctccgatcttcagtcccatgatgccctatggcactgggctgacccca
cagcctgtgacaaacaccaacagtctgtctgcactagaggagcaccagaggctgcagcaa
caacaacagcagcagcaggcctcggcacaacaagggggtgttgcaggcacgtccggacag
accccccagctttatcactcccaggccatcaccacgacaacgtcactgcctggcaacacg
ccactctacaaccccctcacgcccatgacccccatcacccccgccacacctgcgtcagaa
agttctggaatagtcccccagctccaaaatattgtatcaacggtcaacttggggtgcaaa
ttagacctgaagacgatagcattgcgtgccaggaatgctgaatacaacccaaagcgtttt
gctgcagtcatcatgagaatacgagagcccagaactactgctctcatcttcagctcagga
aaaatggtgtgcacaggagccaaaagtgaagagcaatcacgcctcgcagccaggaaatat
gccagagtagtgcagaagttgggtttccctgcgaaattcctagacttcaagattcagaac
atggtgggcagctgtgacgtcaagttccccattagactggaaggactggtgctcacccat
cagcagttcagcagctacgagccagagttgttccctggattaatctacagaatgatcaaa
cctagaattgtgcttttgatattcgtgtctggtaaagttgtactcacaggcgcaaaggtt
agaggagaaatctacgaagcattcgaaaacatctaccccatcttgaaaggatttaggaaa
acaacataa

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