Clupea harengus (Atlantic herring): 105911617
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Entry
105911617 CDS
T09045
Name
(RefSeq) TATA-box-binding protein
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105911617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105911617
03021 Transcription machinery [BR:
char03021
]
105911617
Transcription factors [BR:
char03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
105911617
Transcription machinery [BR:
char03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105911617
RNA polymerase III system
TFIIIB
105911617
RNA polymerase I system
SL1/TIF-1B
105911617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
ANAPC_CDC26
Motif
Other DBs
NCBI-GeneID:
105911617
NCBI-ProteinID:
XP_012695895
Ensembl:
ENSCHAG00000001081
UniProt:
A0A6P3WDK5
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All DBs
Position
13:complement(9919843..9930331)
Genome browser
AA seq
302 aa
AA seq
DB search
MEQNNSLTPFAQGLASPQSVMTPGPPIFSPMMPYGTGLTPQPVTNTNSLSALEEHQRLQQ
QQQQQQASAQQGGVAGTSGQTPQLYHSQAITTTTSLPGNTPLYNPLTPMTPITPATPASE
SSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSG
KMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH
QQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRK
TT
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggagcagaacaacagtttgaccccttttgcccaaggactcgcctctccccagagtgtc
atgacacctggtcctccgatcttcagtcccatgatgccctatggcactgggctgacccca
cagcctgtgacaaacaccaacagtctgtctgcactagaggagcaccagaggctgcagcaa
caacaacagcagcagcaggcctcggcacaacaagggggtgttgcaggcacgtccggacag
accccccagctttatcactcccaggccatcaccacgacaacgtcactgcctggcaacacg
ccactctacaaccccctcacgcccatgacccccatcacccccgccacacctgcgtcagaa
agttctggaatagtcccccagctccaaaatattgtatcaacggtcaacttggggtgcaaa
ttagacctgaagacgatagcattgcgtgccaggaatgctgaatacaacccaaagcgtttt
gctgcagtcatcatgagaatacgagagcccagaactactgctctcatcttcagctcagga
aaaatggtgtgcacaggagccaaaagtgaagagcaatcacgcctcgcagccaggaaatat
gccagagtagtgcagaagttgggtttccctgcgaaattcctagacttcaagattcagaac
atggtgggcagctgtgacgtcaagttccccattagactggaaggactggtgctcacccat
cagcagttcagcagctacgagccagagttgttccctggattaatctacagaatgatcaaa
cctagaattgtgcttttgatattcgtgtctggtaaagttgtactcacaggcgcaaaggtt
agaggagaaatctacgaagcattcgaaaacatctaccccatcttgaaaggatttaggaaa
acaacataa
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integrated database retrieval system