Clupea harengus (Atlantic herring): 105911627
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Entry
105911627 CDS
T09045
Symbol
slc8a1b
Name
(RefSeq) sodium/calcium exchanger 1b isoform X1
KO
K05849
solute carrier family 8 (sodium/calcium exchanger)
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04020
Calcium signaling pathway
char04260
Cardiac muscle contraction
char04261
Adrenergic signaling in cardiomyocytes
char04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
105911627 (slc8a1b)
04020 Calcium signaling pathway
105911627 (slc8a1b)
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
105911627 (slc8a1b)
04261 Adrenergic signaling in cardiomyocytes
105911627 (slc8a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
char02000
]
105911627 (slc8a1b)
00536 Glycosaminoglycan binding proteins [BR:
char00536
]
105911627 (slc8a1b)
Transporters [BR:
char02000
]
Solute carrier family (SLC)
SLC8: Na+/Ca2+ exchanger
105911627 (slc8a1b)
Glycosaminoglycan binding proteins [BR:
char00536
]
Heparan sulfate / Heparin
Others
105911627 (slc8a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Calx-beta
Na_Ca_ex_C
Na_Ca_ex
Flu_M2
Motif
Other DBs
NCBI-GeneID:
105911627
NCBI-ProteinID:
XP_012695907
Ensembl:
ENSCHAG00000001685
UniProt:
A0A6P3WDI7
LinkDB
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Position
13
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AA seq
947 aa
AA seq
DB search
MRCSEVSPFVSLGLRCLVTVAIFCCTIQYVAAENVVHNSETSVPLNGSCGGITTCSKGVV
LPVWLPRNPSFGDKVARATVYFVAMAYMFLGVSIVADRFMASIEVITSQEKEITIKKPNG
ETTTTTVRIWNETVSNLTLMALGSSAPEILLSVIEVCGHGFEAGELGPATIVGSAAFNMF
VIIGLCVYVVPDGECRKIKHLRVFFVTASWSIFAYLWLYLILAVISPGVVQVWEGLLTLF
FFPICVLFAWIADRRLLFYKYVYKRYRAGKHRGMIIETEGDRPLPSKVDIEMDGKMLNSH
AVDFMDGTMTLDLDDKDLDEEEARRDMAKILKELKQKHPDKEVEQLIELANYQVLSQQQK
SRAFYRCQATRLMTGAGNILKKHAADQARKAVSMQEVRSDTNENDPISKIYFDPGSYQCL
ENCGTVAVTVVRRGGDLTQTVSVDFRTEDGTANAGSDYEFTEGTVVFKPSETQKEIRVGI
IDDDIFEEDENFLIHLSNVHVFLEGAEPGSEPAEETTPTAAANHHAEVIACIGAPSTATV
TIFDDDHAGIFTFEEPVTHVSESVGVMEVKVLRTSGARGVVTLPYKTIEGSARGSGEDFE
DSHGILDFQNDEIFKIIKVKIIDDEEYEKNKSFFVEIGQPSLLETNDKKEEGKPEQEEAE
PLTGEADGDRCIADMGRPMLGDHVKLEIIIEESYEFKNTVDKLIKKTNLALLVGTNSWRD
QFIEAITVSAGEDDDDEECGEEKLPSCFDYVMHFLTVFWKVLFAFVPPTDYWNGWACFVV
SIIMIGLLTALIGDLASHFGCTVGLKDSVTAVVFVALGTSVPDTFASKVAAIQDQYADAS
IGNVTGSNAVNVFLGIGVAWSIAAIYHNSQGREFRVDPGNLAFSVTLFTVFALISVSILM
YRRRPDIGGELGGPRTAKAVTCMMFFSFWLLYIIFSSLEAYCHIKAF
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgaggtgctctgaggtttccccctttgtctctttgggcttgaggtgtttggtcaccgtc
gccatcttctgctgtacgatccagtacgtggctgcggagaatgtggttcacaactcggaa
acctccgtgcccctgaacggctcctgtggtggcatcactacgtgctccaagggtgttgtc
ttgccagtctggcttccccgaaacccctcttttggtgataaagtagcgcgggctacggtt
tactttgtggcaatggcctacatgttcctgggtgtctccatcgtcgctgaccgattcatg
gcctccattgaagttatcacgtcccaggagaaggagatcaccatcaagaagcccaacggc
gagaccaccaccaccaccgtgaggatctggaatgagaccgtgtccaacttgaccctgatg
gctctgggttcatccgccccagagatcctgttgtccgtcatcgaggtttgcggccacggc
tttgaggcgggtgaattgggccccgccaccatcgtgggcagcgcggcgtttaacatgttc
gtcatcatcgggctgtgtgtgtatgtggtgcccgatggggagtgtcgcaagatcaaacac
cttcgcgtcttcttcgtcacggcctcctggagcatcttcgcctacctgtggctctacctg
atcctggccgtcatctccccgggcgtggtgcaggtgtgggagggcctgctgacactcttc
tttttccccatctgtgtgttgtttgcctggatagccgaccgacgcctgctcttctacaag
tatgtctacaagcgctaccgcgcgggcaagcaccgtggcatgatcatcgaaacggagggc
gaccggccgctgccttccaaggtagacatcgagatggacggcaagatgctgaactcccac
gctgtggacttcatggatggcacaatgaccctggacttggacgataaggacttagatgaa
gaggaggctcgacgggacatggccaagatcctgaaggagctcaagcaaaagcacccagac
aaggaggtggagcagctgatcgagctggccaactaccaggtgctgagccagcagcagaag
agccgagccttttaccgctgccaagccaccagactgatgacgggcgcggggaacattctg
aagaagcacgcggccgaccaggcccgcaaggctgtcagcatgcaggaggtacgcagcgac
accaacgagaacgaccccatctccaagatctacttcgacccgggctcctaccaatgcctg
gagaactgcggcacagtggcagtcactgtggtgcgccgtggcggcgacctgacccagaca
gtgtcggtggacttccgcacggaggacggcacggccaacgccggatctgattacgagttt
accgagggcacggtggtgttcaagcccagcgagacgcagaaggagatccgcgtgggcatc
attgacgacgacatctttgaggaggacgagaacttcctgatccacctcagcaacgtgcac
gtattcctcgagggtgccgaaccaggcagtgagccggcagaggagaccacgccgacagcc
gcagctaaccaccacgcagaggtcatcgcctgcatcggagcgccctccacggccaccgtc
accatctttgacgacgaccacgcgggcatctttacctttgaggagccggtgacgcacgtg
agcgagagtgtgggcgtcatggaggtgaaggtcctgcgcacatccggagcgcggggcgtg
gtcacgctgccctacaagaccatcgagggatcggcgcgcggaagcggcgaagacttcgaa
gactcccacggcatcctggacttccagaacgacgagatcttcaaaataataaaggtaaag
attatcgacgacgaggagtacgagaagaacaagagcttctttgtggagattggacagccc
agcctcctagaaaccaatgacaagaaagaggagggcaagccagaacaggaagaggcggag
ccactgacaggagaggctgatggtgacagatgcatcgctgatatgggcaggcccatgctg
ggggaccatgtcaaactggagatcatcatcgaggagtcctacgagttcaagaatacagtg
gataaattgataaagaaaacaaacctggcactgcttgtgggcactaacagctggagagat
cagttcatcgaggccatcacagtcagcgctggtgaagatgatgatgacgaggagtgcggc
gaggagaagctgccgtcctgcttcgactacgtcatgcacttcctgacggtgttctggaag
gttctgtttgcgtttgtgccccccaccgactactggaacggctgggcctgcttcgtggtg
tccatcatcatgatcggcctgctcaccgccctcatcggagacctggcctcccactttggc
tgcaccgtcggcctcaaagactccgtcaccgccgtggtgtttgtggctctcgggacgtct
gtaccagacacctttgccagcaaggtggcggccatccaggaccagtacgccgacgcgtcc
atcggcaacgtgacgggcagcaacgcggtcaacgtgttcctaggcatcggcgtggcgtgg
tccatcgcggccatctaccacaactcacagggccgagagttccgggtggacccgggcaac
ctggcgttctccgtcacgctcttcacggtcttcgccttgatcagcgtgtccattctcatg
taccggcgccggcccgacatcggcggcgagctggggggcccccggactgccaaggccgtc
acctgcatgatgttcttcagcttctggctcctgtacatcattttcagctcgctggaggcg
tactgccacatcaaagccttctga
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