Clupea harengus (Atlantic herring): 105911637
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Entry
105911637 CDS
T09045
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM8
KO
K12001
tripartite motif-containing protein 8 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105911637
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105911637
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
105911637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-RING_2
DUF3287
DUF3584
dCache_2
Motif
Other DBs
NCBI-GeneID:
105911637
NCBI-ProteinID:
XP_012695920
Ensembl:
ENSCHAG00000001725
UniProt:
A0A6P3WDJ8
LinkDB
All DBs
Position
13:complement(12820133..12835134)
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AA seq
564 aa
AA seq
DB search
MAENWKNCFEEELICPICLHVFVEPIQLPCKHNFCRGCISEAWAKDTSMVRCPECNHAYN
QKPNLEKNIKLTNIVEKFNALNVDKTPAILQCILCRRGPPLPAQKVCLRCNAPCCQSHVQ
THLQQPSPNPGHLLVEAEDVQAWSCPQHDEYRLYHCDVEQVAVCQYCCFSRCAPNHGHAV
CDVEVRRNDIRHMLLKQQDRIEERVQDIEEQLYKLESDKRLVEDKVQQLKEEVRLQYQKM
HQLLEEDLAKTLEVVDKAKSKFCQENSSQCLQLNGRRQEAKKLLSSVQTVFDKADDINFM
KNTKPVKILMDRTQSCMGNGLSPHKVGHLNSKIFLSEISKKEKNLRKMLEAPFSAPAHFL
QCVHPCSLSSSGADKRKHSSAFPSESSSGANAFLADSSSSTSSSSGPLSKQQFLVQSPGG
GEGQSSQQPPPPMQGPCGSAAQHSASVFPPPPHPYPPGGSSSQQPLLPQYGGRKILMCTM
DNCYCSSVPSVSRHRAHPPYPRSGSFPWAVGSQEYPHALPSGPPMSQPLQGLSMRDWMDA
SQTHRHPDFYGLYGQSSAKHYVTS
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaactggaaaaattgcttcgaggaggaacttatttgtcccatatgtttgcat
gtgtttgttgaaccgatacaactgccttgtaaacacaacttttgccggggatgcataagc
gaggcctgggccaaagacacgagtatggtgaggtgcccagagtgcaaccacgcctacaac
cagaagccaaatctagagaaaaacatcaaactgacgaacattgtggagaagttcaacgca
cttaacgttgataaaactccagcaatacttcagtgtatcctttgtcggcgaggaccgcct
cttcctgcacagaaagtttgtctccgctgcaacgcaccttgctgccagtcccacgtccag
acgcatctccaacagccttctcccaatcccgggcatttgttagttgaggccgaggatgtg
caggcctggagctgccctcaacacgacgaatacagactctaccattgcgatgtagaacag
gtggccgtctgccagtactgctgcttctccagatgcgctcccaaccatggacatgccgta
tgcgacgtggaagttcgtcgcaatgacatacggcacatgctgctgaagcaacaggaccgt
atcgaggagcgcgttcaggacatagaggagcagctctacaaattggaatctgacaaacgg
ctagtggaggacaaggtgcagcagttgaaggaggaggtgcgcctgcagtaccagaagatg
caccagctcctggaggaggacctggccaagaccctggaggtggtggacaaggccaagtcc
aagttctgccaggagaactccagccagtgcctgcagctcaacggccggcgccaggaggcc
aagaagctgctcagctccgtgcagaccgtcttcgacaaggctgacgacatcaacttcatg
aagaacaccaaacctgtcaagatactaatggacagaactcagtcatgcatgggcaatggc
ctgtctcctcataaagtcggccatctgaactccaaaatcttcctctcagagatctccaag
aaggagaaaaacctacggaaaatgctggaagctccgttcagtgcccccgcccacttcctg
cagtgtgtgcacccctgcagcctaagcagctccggggccgacaagcgcaagcactcctcc
gccttcccctctgaaagctcgtccggggccaacgctttcctggccgactcctcctcttcc
acctcctcttcctcgggccccctgagcaagcagcagttcctggttcagagtcccggaggt
ggggaaggccagtcctcccagcagcccccgccccccatgcaaggcccctgcggctcggcg
gcgcagcactcggcctccgtcttcccgccccctccgcacccctacccccccgggggcagc
tcctcgcagcagccgctgctgccccagtacggcggacgcaagatcctcatgtgcaccatg
gacaactgctactgctccagcgtgccgtccgtgtccaggcaccgcgcccacccgccctac
ccgcgctcgggctccttcccctgggcggtgggctcgcaggagtacccccacgccttgccc
tctgggccgcccatgtcccagccgctccagggcctgtccatgcgggattggatggacgcc
tcgcagacgcacagacaccccgacttctacggcctgtacggccagtcctccgccaagcac
tatgtcactagctaa
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