Clupea harengus (Atlantic herring): 105911670
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Entry
105911670 CDS
T09045
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
105911670
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
char01009
]
105911670
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
char04515
]
105911670
Protein phosphatases and associated proteins [BR:
char01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
105911670
Cell adhesion molecules [BR:
char04515
]
Cadherins
Protocadherins
105911670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
CD34_antigen
Motif
Other DBs
NCBI-GeneID:
105911670
NCBI-ProteinID:
XP_031414839
Ensembl:
ENSCHAG00000017875
UniProt:
A0A6P8ES30
LinkDB
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Position
21:11868835..11872934
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AA seq
886 aa
AA seq
DB search
MVSGKRVRRLITRGEIQGLCLLLLYTSPLSCFSNFSPLIYKIKEGLPKGTLIGAIGTDLH
LDFSVDPPLLFNLAQKKINEQYVELNNTTGELFTSAVQMDRESLCADRGEGQSCSLALDV
FILPQQYFQLVKVKVLIEDVNDNRPRFPSDEIRVKVPENAPVNARFAVEQSAVDPDLGVN
SVQTYWLVNDFGVFTLDVEENEGGELTPFLIVTEALDRERQAEYVTDIIAEDGGSPPLLG
TATLRVVILDINDNCPKFSEAQVNVTVYGNATRGSQLARLHAFDHDLGANAQINYSYSER
ITRETRNLFHLDRVTGVIKLAGKIDTNTAKLYKLTVLANGPACIPDVATVTIHIIKVVSG
PPLLIPRYIAAEKDGVVSLKESEPAFTPIAFFTVKNIDSRQRVECLLEGLGPFKLSPYER
FKNEYLLETTEPLDYEMRQEYQLTIVGRNLHGVVIKTVVRVQVEDENDNAPVFKQSMLEI
FVEENNAPNTFLTKLQATDADSGSRGEVVYLLGSDAPPNIFYLDRQLGVLTVTTSLDREE
KETYRFMVRAVDCGSPRRESIATVIITVQDRNDNSPRFINKDFTFFVPENFPGFGEIGVL
SVTDADAGKNGWVALSILNGSDIFVIDTGRGALRAKTSLDREQQGTYYLWIEAVDGGKPA
LSCITMVTVLLLDVNDNPPIVLFPQSNQSYMLVLPSTLPGTSITEVYAVDRDTGMNAVIA
YSIIKRLGGGQSSFDIDPNTGNITLRRSLSDRGLYSLLVKVSDHGQPEPLHSTIMVNLFV
NETVSNESYIQSLLLRQAEIEIEESIGSRESRQWIQDRQVFPCQPVIIGLLTTCLGLLIM
VVSLTVYISCRKLRKHKKKRLEVEIPLKMNSDMQAVDRKLMEISNI
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggtcagcggcaaaagggtccgccgccttataaccagaggagagatacagggtttgtgc
cttctgctgctttacaccagccctctctcctgcttttcaaatttcagccctctcatctat
aagataaaagaaggcttacccaaggggactttaataggggccattggcacagacttacat
ttggatttctccgttgatcccccgcttttattcaatctggcacaaaagaagatcaacgag
cagtatgtggagctgaataataccacaggggagctgttcacatcggcagtgcagatggac
agggagagcctgtgtgcggatcggggcgagggtcaaagctgctcactagcgctggacgtg
ttcattctgccgcagcagtacttccagctggtgaaggtcaaggtcctcatcgaggacgtc
aatgacaaccgtccgcgcttcccgtcggacgagatccgggtgaaggtgccagagaacgca
ccggtaaacgcgcgcttcgccgtggagcagtcggctgtggacccggacctcggggtgaac
agtgtgcagacatactggctggtcaacgacttcggggtgtttacgctggacgtggaggag
aacgaggggggcgagctcacacccttcctcattgtgaccgaggcgctggaccgcgagagg
caagcggagtacgtgacggatatcatcgccgaggacggtggctcccctccgctcctcggc
actgccaccctgcgggtcgtcatcttggacattaacgacaactgccccaagttcagcgag
gcacaggtgaatgtaacggtgtatgggaacgccacccggggcagccagctggcgcgcctc
cacgcctttgaccacgacctgggggccaacgctcagatcaactactcctacagtgagcgc
atcaccagggaaacccggaacctcttccacttggatagagtgactggcgtgattaagctg
gcagggaaaatcgacaccaacaccgccaagctctacaagctgaccgtgctcgccaatgga
ccggcctgcatcccggacgtcgccacggtgaccatccacatcatcaaggtggtgtcggga
ccaccgttgctcatcccacgctacatcgcggccgagaaagacggcgtggtctcgctgaag
gagtccgagccggcgttcacccccatcgcctttttcactgtgaagaacatcgattcgcga
cagagggtggagtgtctgctggagggcttgggcccgtttaaactctccccttacgagcgc
ttcaaaaacgagtacctgctggagaccaccgagccgctggattacgagatgcggcaggag
taccagctcaccatcgtgggcaggaacctccacggtgtggtcattaagacggtggtgagg
gtgcaggtggaggatgagaacgacaacgccccagtcttcaagcagtccatgctggagatc
tttgtggaggagaacaatgcccccaacaccttcctcaccaagctgcaggcaacagacgca
gacagcgggagccgaggggaggtggtctacctgctgggttcggacgcaccccccaatatc
ttctacctggaccgtcagttgggggtgctgacggtgaccacctccctagaccgtgaggag
aaggaaacgtaccggttcatggtacgtgcagtggactgtgggtcaccgcggagggagagc
atcgccacggtcatcatcactgtgcaggaccgcaacgacaacagcccacgcttcatcaac
aaggacttcaccttcttcgtgccggagaacttcccggggttcggcgaaattggggtgctg
tcggtgaccgatgctgatgccgggaaaaatggctgggtggcgctgtccatccttaatggc
agcgacatcttcgtcatagacacagggcgtggcgccctgcgtgccaagacctcactggat
cgcgaacagcaggggacctactacctgtggatcgaggcagttgacggaggcaagcccgcc
ctctcctgcatcactatggtgacagtgctgctcctggacgtcaacgacaacccacccatt
gtcctcttcccccaatccaaccagtcctacatgctggtgctacccagcaccttaccgggg
acctccatcaccgaggtctacgcggtagaccgggacacaggcatgaatgcggtcatcgca
tacagcatcatcaaaaggctgggcggcgggcagagctccttcgacatcgaccccaacacc
ggcaacatcaccctacgcaggagcctcagcgaccgtggcctctacagcctgctggtgaag
gtcagtgaccacgggcagcctgagccactgcactccaccattatggtcaacctgtttgtc
aatgagacggtgagcaacgagagctacatccagagcctgctcttgcggcaggccgagatt
gagatcgaggagagcattggatcgcgggaatcccgccagtggatccaggatcggcaggtg
ttcccgtgccaaccggtcataatcgggctgttgacaacctgcctgggactgctcatcatg
gtggtgtcactgactgtgtacattagctgcagaaagctccggaaacataaaaagaaacga
ttagaggtggaaatccctttaaaaatgaacagtgacatgcaagcagtggaccggaaactc
atggagatttccaacatatga
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