Clupea harengus (Atlantic herring): 105911727
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Entry
105911727 CDS
T09045
Symbol
opn4xa
Name
(RefSeq) opsin 4xa isoform X2
KO
K04255
r-opsin
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
char04030
]
105911727 (opn4xa)
G protein-coupled receptors [BR:
char04030
]
Rhodopsin family
Vision
Opsin
105911727 (opn4xa)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srsx
7TM_GPCR_Srx
7tm_4
Motif
Other DBs
NCBI-GeneID:
105911727
NCBI-ProteinID:
XP_012696011
UniProt:
A0A6P3WDS3
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Position
21:16887329..16912068
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AA seq
535 aa
AA seq
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MDRGFFRKVDVPDHWHYIVAFFVVVIGALGVVGNALVIYAFFSNKKLWTPPNYFIMSLAV
ADFLMAITQSPIFFINSLYKEWVFGETGCKIYAFCGALFGIASMINLLAISIDRYIVITK
PFQAIVWTSKRRTLLIILVVWLYSLAWSLAPLLGWSSYIPEGLMTSCTWDYVTSTPSNKS
YTLMLCCFVFFIPLGIILYCYLFMFLAIRSTGRDLERLGSQGRKSTLIQQQSIKTEWKLA
KIAFIVIIVFVLSWSPYATVTLIAWAGYGSYLTPYSKAVPAVIAKASAIYNPFIYAIIHS
KYRDTLAANVPCLSFLSQPPRKDCISVSNSECSFRESMLSRTSSGSKNKFYRISSMSTGD
TVWSDVELDPMDQLSRGSRSTCMMRERDRNQVHLPGKAKGSAKEGKAKIPERKSLISSSH
DPVPMSVSTATAPLPLPLPVARHGGGEDEDAEDPKEKQCKDTTSPAAPPNTGLFFYENGG
RRLSPVSPSVQQQGVAKDRLAEQTSTQGNEDDVLVDLQRVNCSGVLPDSAEKLLC
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggaccgaggcttcttccggaaggtggatgtcccggaccattggcactacatcgtggca
ttctttgtggtggtaatcggtgctttgggcgtcgtgggtaatgctctggttatctatgcc
ttcttcagtaacaaaaagttgtggacgccaccaaactacttcatcatgagtctggctgtg
gccgatttcctcatggccatcactcagtcacccatattcttcatcaactccctctacaag
gagtgggtgtttggtgaaactggctgtaagatatatgccttctgtggggccttgttcggg
attgcctccatgatcaacctgttggccatttccatcgaccgctacattgtgataaccaag
ccctttcaggctatagtgtggacatccaaacgccgcactctgctcatcattctcgtggtg
tggctttactcactagcctggagcctggctcctctgctaggatggagctcctacatccca
gagggcctgatgacctcctgcacatgggactacgtcacctccacgccctccaacaagagc
tacaccctcatgctctgctgtttcgtcttcttcatcccgctggggatcatactctactgc
tacctcttcatgttcctggccatccgcagcactggcagagatctcgagaggctgggcagt
cagggaaggaagtccaccctgattcagcagcagtccataaagacggagtggaagctggcc
aagattgccttcatcgtcatcatcgtgtttgtgctgtcctggtctccgtacgccactgtg
acgttaatcgcctgggccgggtatggcagctacctcacaccatactcaaaggcagtgccc
gcggttatagcaaaagcctccgctatatacaacccattcatctatgccatcatccactcc
aaatacagggacactctggcggcgaacgtgccgtgcctgagcttcctgtcccagccccct
cgaaaggactgcatctccgtgtccaacagcgagtgttccttcagggagtccatgctcagc
agaacgtcgtctgggtccaagaacaagttctacaggatttcctccatgtctacgggagac
acagtatggagtgatgttgagctggatcccatggatcagttgtcacggggatcgcgatcc
acctgtatgatgagggagagagaccgaaaccaagttcatctgccggggaaggcgaagggc
tctgccaaagaggggaaggccaaaatcccagagagaaaatcactgatcagctcctcccac
gacccggtgcctatgtctgtcagcaccgccactgccccgctcccgctcccgctccccgtg
gccagacatggcgggggtgaagatgaggatgccgaggatcctaaagaaaagcagtgcaaa
gacactaccagccctgcagctcctcctaacacaggcctattcttctatgagaacggcggg
aggcggttgtccccggtgtccccatcagtccaacagcagggggtggctaaggaccgtctg
gctgagcagacaagtactcagggaaatgaggacgacgtgcttgtggacctgcagagggtg
aactgctctggtgtactgccggactccgcagagaaactcctatgctga
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