Clupea harengus (Atlantic herring): 105911769
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Entry
105911769 CDS
T09045
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105911769 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
char04990
]
105911769 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
char04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
105911769 (pdlim5b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
GP38
Motif
Other DBs
NCBI-GeneID:
105911769
NCBI-ProteinID:
XP_031414221
Ensembl:
ENSCHAG00000027143
UniProt:
A0A6P8EPH8
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Position
21:16915056..16982529
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AA seq
596 aa
AA seq
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MSSSYSVALIGPSPWGFRLQGGKDFCMPLNISKLTDGGKASKANISVGDTVLSIDGISTE
GMTHLEAQNKIKACTGNLNLTLQKGTTIPKADAKAEPQEIIKPVPITHTSASPVPFSSGG
GGSGRGSPAPAYNKTARPFGGGGGAPSSGVSTPPRVAFIPSASSAFTPTAPTAAPVHSQH
QQKQPIRAFPPPSSSSSASSSASSSPGRNTGPAPPPSSVYNTPIQLYSSENAVEVAMGQQ
RGLLEAKGGVELFNGTAKKPVLTAEREVAPPPAPVSHSSKQRLMEDTEDWHPRTGTSQSR
SFRILAQITGTENDQAPENSSAKNEVVDDLISSAPLRSKVSVAPRHGNGVAPPSSKPWQS
GNTAGLPKAGAQPSFGRVSNASSAPKVAPARPAPQPHPMDQDSLVQRAEHVAAGTRTPMC
AHCNMVIRGPFLVAMGKSWHPEEFNCSHCRTSLVEVGFVEERGTVHCEHCYEKYLAPSCA
RCQGKVLGEVINALKQTWHVSCFLCTTCQQPIRNNTFHMEDGQPYCEKDYYEVFGTSCHG
CDFPIEAGDKFLEALGFTWHDTCFVCAVCQTSLEGQTFFSKKDKALCKKHAHTVKI
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagctacagtgtcgccctcattggcccctccccctggggtttcagactgcag
ggtgggaaggacttctgcatgcccctcaacatctcaaaattgacagatggggggaaggca
tccaaagccaacatcagcgtcggagacacagtgctgtccattgacggcatctccacagag
ggcatgacccatctggaagcgcagaacaagatcaaggcctgcacgggcaacctgaacctc
accctgcagaaaggcacaactattccaaaggcagatgctaaggctgagccccaggagatc
ataaagcctgtgcccatcacacacacctccgcctcgcccgtgcccttctccagtgggggc
ggcggcagcggcaggggcagccccgcgcccgcctacaacaagacggcccggcccttcggg
ggtggcggcggagctccttcgtcgggggtttccacgcccccccgcgtggccttcatcccc
tccgcctcctcggccttcacccccaccgcccccaccgccgcccccgtccactcccagcac
cagcagaagcagcctatccgcgccttcccccctccatcctcctcctcctcggcctcctct
tcggcctcctcctccccgggccgtaacacgggccccgccccgccgccctcctccgtctac
aacacgcccatccagctgtactcgagcgagaacgccgtcgaggtggccatgggacagcag
agggggctgctggaggccaaggggggtgtggagctctttaacgggacggcgaagaagccc
gtgttgactgcggagcgtgaggtggctccgcccccggccccggtgtcccacagcagtaag
cagcgtctgatggaggacacggaggactggcacccgcgcaccggcacctctcagtcccgc
tccttccgcatcctggcccagatcaccggcaccgagaatgatcaagctccagagaacagc
tctgcaaagaatgaagtggtggatgatctcatctccagtgctccgctgagatccaaagtg
tctgtagcccctcgccatggtaacggagttgccccgccctcctccaaaccctggcagtcc
ggcaacacagcaggtctgcccaaagcgggtgcccagccatccttcggccgggtgagcaac
gccagcagcgcccccaaggtggcgccagcgcgccccgccccccagcctcaccccatggac
caggactctctggtgcagcgcgccgagcacgtggcagccggaacacgcacgccaatgtgt
gcccactgcaacatggtcatcaggggcccgttcctggttgccatggggaagtcgtggcac
ccggaggagttcaactgctcccactgccgcacctcgctggtggaggtgggcttcgtggag
gagcggggcactgtgcactgtgagcactgctatgagaagtacctggccccctcctgcgcc
cgctgccaggggaaggtgctgggggaagtgatcaacgctctgaagcagacgtggcacgtg
tcctgcttcctgtgcacaacctgccagcagcccatccgcaacaacaccttccacatggag
gacggacagccctactgcgagaaagattactatgaggtctttgggacgagctgtcatggc
tgtgatttccctatcgaggccggagacaagttcctggaggccctcggcttcacctggcac
gacacctgcttcgtgtgtgcggtctgccagaccagcctggaggggcagacgttcttctcc
aagaaggacaaggccctgtgcaagaaacatgcccacactgtcaaaatctaa
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