Clupea harengus (Atlantic herring): 105911835
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Entry
105911835 CDS
T09045
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105911835 (vldlr)
Membrane trafficking [BR:
char04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
105911835 (vldlr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF
hEGF
Motif
Other DBs
NCBI-GeneID:
105911835
NCBI-ProteinID:
XP_012696137
Ensembl:
ENSCHAG00000026006
UniProt:
A0A6P3WDP6
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Position
21:complement(16570174..16590338)
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AA seq
890 aa
AA seq
DB search
MVTSILGFLILPICLCGYVRGTQTQCEPSQFQCGNGRCIPSVWKCDGDEDCSDGSDENTC
VRKTCAEVDFVCRNGQCIPKRWHCDGEPDCEDGTDESIDLCHTRTCRVNEFSCGTGSTQC
IPVSWKCDGEKDCDNGEDEVLCGNITCAPLEFTCASGRCISANFVCNGEDDCGDGSDEKD
CPPSSCGPSEFQCGNAYCIPGNWVCDDDVDCQDQSDEAPQRCGRPTPPAKCSSSEVQCSS
GECIHRKWRCDGDPDCKDGSDEKNCPVRTCRPDQFKCEDGICIHGSRQCNGMRDCADGTD
EVNCKNVTQCNGPDKFKCRSGECIEMSKVCNKARDCPDWSDEPIKECNLNECLLNNGGCS
HICRDMVIGYECDCTPGLQLIDRKTCGDINECQNPGICSQICINLKGGYKCECHSGYQMD
PTTGVCKAVGKEPCLIFTNRRDIRKLGLERREYTQIVEQLRNTVALDADFTQQKIFWADL
GQKAIFSTWLDKREETSSHVRVIEDVQMPVGIAVDWIYKNIYWSDLGSKSIAVANFNGTK
RKVLFGSGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVDTDIQWPNGIT
LDLIKSRLYWVDSKLHMLCSVDFNGDNRRKVLQSSNYLAHPFALTVFEDRVFWTDGENEA
IYGANKFTGSDVTVLASNLNEPQDIIVYHELIQLSGTDWCNEKQENGGCSYMCLPAPQIN
KHSPKYTCVCPDGWKLGSDGRTCKPANASAAPKDAGKAQSPSAPPQEWPLHTPNEQNGSC
KSAECGGSHFFHTIKDGNVSASMHEVSSSAKGSAAAWAILPVLLLAMAVAGGYLMWRNWQ
SKNKKSMNFDNPVYLKTTEEDLNIDITRHTASVGHTYPAISVVSTDDDLS
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgtctattctgggatttcttattctgccaatatgtctgtgtggatatgttcga
gggacgcagacacagtgcgagccctcgcagttccagtgtgggaatggccgctgcatcccc
tctgtgtggaagtgtgatggagacgaggactgctcagacggcagcgacgagaacacctgt
gtgaggaagacctgtgcggaggtggactttgtttgccggaatggccagtgcatccccaag
cggtggcactgcgatggggagccggactgtgaagatggtaccgacgagagcatcgacctg
tgccacaccaggacgtgtcgagtgaatgagttcagttgcggcaccggctccacacagtgc
attcccgtctcctggaagtgtgacggagagaaggactgtgacaacggagaggatgaggtg
ctctgtggtaacatcacctgcgctcctctggagttcacctgcgccagcggccgctgcatc
tctgccaacttcgtgtgcaacggcgaggacgactgcggcgacgggagcgacgagaaggac
tgccccccatcgtcctgcggcccgagtgagttccaatgcggcaacgcctactgcatcccc
ggcaactgggtgtgcgacgacgacgtggactgccaggaccagtcggacgaggcgccgcag
cgctgcgggcggcccaccccgccggccaagtgctcgtccagcgaggtccagtgcagctcg
ggggagtgcatccacaggaagtggcgctgcgacggtgaccccgactgcaaggacggcagc
gacgagaagaactgccctgtccgcacctgcaggccagaccaattcaagtgtgaggacggc
atctgtatccacggcagccggcagtgcaatggcatgagggactgtgcagatggcactgat
gaagtaaactgtaaaaatgtgacccagtgcaatggcccagacaagttcaagtgtcggagt
ggagagtgcatcgagatgagcaaggtgtgcaacaaggcccgcgactgtcccgactggagc
gacgagcccatcaaggagtgcaatctgaacgagtgtctgctcaacaatggtggctgttcc
catatctgcagggacatggtgattggttatgagtgcgactgtactcctggcctgcagctc
atagatcgcaagacctgtggagatataaatgaatgtcagaaccctgggatctgtagccag
atctgtataaacctgaaaggagggtacaagtgcgagtgccacagtgggtaccagatggac
cccaccacgggagtctgcaaggctgtcggtaaagagccctgcctaatcttcactaatcgg
cgggatatccgtaaactggggctggagaggagggagtacacccagatcgtggagcagctg
aggaacactgtggccttagatgctgatttcacccagcagaagatcttctgggcggacctg
gggcagaaagccatcttcagcacgtggctagataaacgagaggagacctcgagccatgtc
agggtaatagaagatgttcagatgcccgtagggattgcagtggactggatttataagaac
atctactggtcggatctgggcagcaagagcattgcagtggcaaacttcaacggcaccaag
aggaaagttctgtttggcagtggcctgaaggagccagcctccatagctgtggatcccctc
tcagggtttttgtactggtctgactggggtgagccagctaagattgagaagtctgggatg
aatggagttgaccggcaggtcctggtcgacacagacattcagtggcccaatggaatcact
ctggatctgatcaagagccgcctctactgggtggattctaagctgcacatgctctgcagt
gtcgacttcaatggcgacaaccgccggaaagtacttcagtcatcgaactacctggctcac
ccgtttgccctcactgtgtttgaggaccgggtgttctggacagacggagagaatgaggca
atttatggtgcaaacaagttcacaggatctgacgtgaccgttttggccagcaatctgaat
gaacctcaggacattatagtttatcatgagctaattcaactctcaggaactgactggtgc
aacgagaagcaagagaatggcggctgctcttacatgtgcctgccagcgccgcagatcaac
aagcactctccaaagtacacgtgcgtctgccccgatggctggaagcttggctccgacggc
cggacgtgtaaaccagccaatgcctcagctgccccaaaggatgctgggaaggcacagtca
ccctctgctccccctcaagaatggcccttgcatactccaaacgaacagaacggcagttgt
aaatctgctgaatgtggtggtagtcatttttttcacacaataaaagatgggaatgtcagt
gcatccatgcacgaggtcagctcttctgctaaaggatccgcagctgcgtgggccattctg
cctgtcttgcttttggcaatggcggttgctggtggttatctgatgtggagaaactggcaa
tcgaagaataagaaaagcatgaactttgacaatccagtgtacctgaagaccacagaggaa
gaccttaacattgacatcaccagacacacggcttctgtcggacacacgtacccagcgata
tccgtggtaagcacagacgacgacctttcctaa
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