Clupea harengus (Atlantic herring): 105911916
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Entry
105911916 CDS
T09045
Symbol
gpc6a
Name
(RefSeq) glypican-6a isoform X1
KO
K08112
glypican 6
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
char00535
]
105911916 (gpc6a)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
char00537
]
105911916 (gpc6a)
Proteoglycans [BR:
char00535
]
Cell surface proteoglycans
Glypican family (GPI-anchored HSPG)
105911916 (gpc6a)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
char00537
]
Others
105911916 (gpc6a)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Glypican
Serglycin
COP9_hel_rpt
Motif
Other DBs
NCBI-GeneID:
105911916
NCBI-ProteinID:
XP_012696266
Ensembl:
ENSCHAG00000024676
UniProt:
A0A6P3WDU9
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Position
21:complement(15444362..15597395)
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AA seq
568 aa
AA seq
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MFRVQVVFCTLSVLLSFSFGGDVKSRSCNDVRQAYTAKGFSLTSVPHQEISGEHLRVCSQ
GYTCCTSEMEDKLSQQSKLEFENLVEETSQNLRTTFVSRHKKFDEFFLELLDNSQRSLND
MFVRTYGKLYTQNSEVFQDLFTELKRYYTGGNVNLQEMLNDFWSRLLERMFQLLNSQYTF
TDDYLECISKYTDQLKPFGDVPRKLKAQVTRAFIAARTFVQGLMVGREVANRVAKVNLLP
GCSKALTRMLYCPYCGGMPDLKPCANYCQNVIKGCLANQADLDPEWNLFIDAMLLVAERL
EGPFNIEAVMEPIDVKISEAIMTMQDNTMQVSAKVFQGCGHPKPAGMGRSARGITDTFNA
RFRPYSPEERPTTAAGTSLDRLRIVWRTMQHSVVDIKERLKESKKFWSSLPDSICTDERV
VSTDSEQCWNSHTKGRYFPEVVKDGLTNQLHNPEVEVDITRPDTFIRQQIMTLRMMTTKL
RNAYNGNDIYFQDSSDEGSGSGSGSGCTEGCTTEFDFVGTETPVVAADRSDGRAATAPAS
GASASWLAASSTLLTSLALQLVLHWQWR
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgttcagagtgcaggtcgtgttttgcactttgtcggtgctcctgtccttttcatttggc
ggcgatgttaaatcgcggagctgcaatgatgttcggcaagcctacaccgccaaaggcttt
agtctcaccagtgttcctcaccaggaaatatcaggtgaacatctgcgtgtgtgttcccaa
ggttacacctgctgcacatcagaaatggaggataaacttagtcagcagagcaagctggag
tttgagaacctggtggaggagacaagccaaaacctgcgtaccacgttcgtctctcgccat
aaaaagtttgacgaattcttcctggagttgctggataactcacagaggtcactgaacgac
atgttcgtgcggacatacggcaaactgtacacgcagaactcggaggtcttccaggacctg
ttcacggagctgaagcgctactacacgggcggcaatgtcaacctgcaggagatgctcaac
gacttctggtcgcggctgctcgagcgcatgttccagctgctcaactcgcagtacaccttc
accgacgactacctggagtgcatcagcaagtacaccgaccagctcaagcccttcggcgac
gtgcctcggaagctcaaggcccaggtcacgagggccttcattgcagcccggacgtttgtt
caggggctcatggttggtcgagaggtggcaaacagagtggcgaaggtgaatctgttgcca
ggctgttccaaggcgctcacgcggatgctctactgtccgtactgcggaggaatgcctgac
ctgaagccctgtgcaaactactgccagaatgtcataaagggctgcttggcaaatcaggca
gacttggaccctgagtggaacttattcatcgatgccatgctgttggtggcagagagactg
gaaggaccattcaacatagaggccgtcatggagcccatagatgtcaagatctccgaggcc
atcatgaccatgcaggataacaccatgcaggtttcagcaaaggttttccagggatgtggg
catcccaagcctgctggaatggggcggtcggcccgcggcatcacagacactttcaacgcc
cgcttcagaccctacagcccagaggagcggcccaccaccgccgctggcaccagccttgac
cgcttgaggattgtctggaggacaatgcaacacagcgtggtcgacatcaaagagaggctg
aaggagtccaagaagttctggtccagcttgcctgacagcatctgcacggacgagcgggtg
gtgagcacagactcggagcagtgctggaacagtcacaccaagggcagatactttcctgaa
gtggtgaaagatggtttgacaaatcagctgcacaatcccgaggtggaggtggacatcact
cgacccgacaccttcatccgccagcagatcatgacactccgcatgatgaccaccaagttg
cggaacgcatacaacgggaatgatatctacttccaagattccagtgacgagggcagtggc
tcgggcagcgggagcggctgcacagaaggctgcaccacagagtttgacttcgtcggcacc
gagacccccgtggtggctgccgaccggagcgacgggcgggcagccaccgcccccgcctcc
ggagcctccgcatcctggttggcagcctcctccaccctcctcacgtcactggccctgcag
ctggtcctgcactggcagtggagataa
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