Clupea harengus (Atlantic herring): 105911942
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Entry
105911942 CDS
T09045
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105911942 (si:ch211-114c17.1)
Spliceosome [BR:
char03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
105911942 (si:ch211-114c17.1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
TPR_6
TPR_15
TPR_2
TPR_MalT
TPR_11
TPR_12
ARM_TT21_4th
DUF5858
TPR_21
Motif
Other DBs
NCBI-GeneID:
105911942
NCBI-ProteinID:
XP_012696307
UniProt:
A0A6P3WDW8
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Position
20:complement(1976738..1984560)
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AA seq
739 aa
AA seq
DB search
MTSFVLSSDMAAEGSEDLSGNGEMDNQEGELGDSEAFVAPNPENQASEEADGTMMEAVEA
TAPYTMPVVEGDEEDEGELPVDFDRLWKVAHDNPQDFTSWTDLLQYCEQEGHMTASRRAL
NAFLLRYPLCYGYWKKFADMERRAGNNVKAEEVCVQGLKAIPLSVDLWIHYINLLLGTLN
MNLPESTQRIRSVLEEALEAAGMDWHSDRLWDLFAEWEKEQGNLKAMTVVYDRALKVPTQ
LYRGHYDKMKTHINSNPPLDILSEEEYQTLRAEYKQSQAQGEGSNPTEEEEERPPGEEEP
ADNDDGKDSEEAVQKMQELLLAGREKIFQENEAEVRKRWTFEDAIKRPYFHVKPLDKAQL
KGWQSYLDWEMAEAKGEHEGTEGAEVTEGTEGTEEAAAEVEQEAPEAPKAEGGISGHKRV
LILFERCLIACALYEEFWTKYAHYMEQSSVEEARTVFRRTCEIHLPYKHSVHLHWATFEE
RHGNFTVAQNILETLEQTMPGLAVVRLRRAGLERRLGHVDRAETMLTEAVEQSKENPPLH
AFYSIKLARLLLKLGKNASRARTVLQEAIELNPDNGKLHLNLLELEVSGDPRTNGTGVQQ
CVTRALAAPLSPRTKILFSQRGLQFAEDFGATVQSVLTMYDEHQKLLKEIGPKKRGAENG
DSDDPEKVSRTDDGSATAAAQTAPPTVPPAPMTAPPPPMMGDMSGSYGSYSSWYQQPQYG
GYGGYQNPWNQYNQYYPPS
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcatttgttttatcttcggacatggcggcagaaggttctgaggatcttagtggc
aatggagaaatggataaccaagaaggagagcttggagactccgaagccttcgtggcaccc
aatcctgagaaccaggcttctgaagaagccgacggtacgatgatggaagcagtggaggct
acggcaccgtacaccatgcccgtagtggagggcgacgaggaggatgagggagagctcccg
gtggacttcgacaggctgtggaaagtagcccacgacaatccccaggatttcactagttgg
acagacctgctacaatactgtgaacaagagggtcacatgacggcttcccgtagggctttg
aatgccttcctgttgcggtacccactgtgttatggctactggaagaagtttgcagacatg
gagagacgagcagggaataatgtcaaggcagaggaggtgtgtgtgcagggcttaaaggcc
atccctttgagtgtcgacctttggatccattatatcaacttgttactggggactctgaac
atgaacttgcctgagtccacacagcgcattcgcagcgtgttggaagaggcgctggaggcc
gcggggatggactggcactcggaccggctctgggacctgttcgctgagtgggagaaggag
cagggcaacctgaaagccatgactgtggtctacgaccgggcgctcaaagtgcccacacag
ctctaccgtggacactatgacaagatgaagactcacataaactccaatccacctctggat
attctgtctgaagaggaatatcagactctgcgggcagaatacaaacagagccaagctcag
ggagaagggtccaaccccaccgaggaggaagaggagagacccccaggagaggaggaaccc
gcagacaacgacgatggcaaagattcggaagaagccgtgcaaaagatgcaggagctctta
ttggccggcagagagaagatcttccaggagaatgaagcagaggtcaggaagagatggaca
tttgaagatgctatcaaaagaccatactttcatgttaaaccactggacaaggctcagctg
aagggctggcagagctacctggactgggagatggccgaggccaaaggggagcacgagggc
accgagggggcagaggtgaccgaggggacagaggggaccgaggaggcagcagcagaggtg
gagcaagaggccccagaggccccaaaggctgagggaggcatctctggacacaagagggtg
ctgattctgtttgagcgctgtctcatcgcctgtgccctctacgaggagttctggaccaag
tatgctcactacatggagcagtctagcgtggaggaggcacgcactgtgtttcggagaacc
tgtgagatccacttgccctacaagcactccgtccacctgcattgggcaacctttgaagag
cggcacggaaacttcactgtagcccagaatattctagaaactttggagcaaaccatgccg
gggctggccgtggtgcgcctgcgcagggcggggctggagaggcgattgggccatgtggat
cgggcggagacgatgctgacggaggccgtagagcagagcaaagagaatcctccgctgcac
gccttctactccatcaagctggcccgtctgctcctcaagctgggcaagaatgcgtccagg
gcccgcactgtgttacaggaagccatagagctcaacccagacaacggtaagctgcacctg
aacctgcttgagctggaggtgtcgggagacccgcgcacgaacggaacgggggtgcagcag
tgcgtcacccgagctctggccgcccccctctcgccccgcaccaaaatcctcttctcccag
cggggcctgcagtttgccgaagacttcggagccaccgttcaaagcgtcctgaccatgtac
gacgagcaccagaagctgctgaaggaaataggcccgaaaaaaaggggagcggaaaatgga
gatagcgatgacccagagaaggttagccgcacggatgacggctcagccacggccgcggcc
cagactgccccccccaccgtaccgcctgcccccatgacggcgccccctcctcccatgatg
ggggacatgagtgggtcatatggaagctacagcagctggtatcagcaaccgcagtatgga
ggatatggaggataccagaacccatggaatcagtacaatcagtattaccctcccagctag
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