Clupea harengus (Atlantic herring): 105911975
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Entry
105911975 CDS
T09045
Name
(RefSeq) 60 kDa heat shock protein, mitochondrial-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105911975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105911975
03110 Chaperones and folding catalysts [BR:
char03110
]
105911975
03029 Mitochondrial biogenesis [BR:
char03029
]
105911975
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
105911975
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
105911975
Messenger RNA biogenesis [BR:
char03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
105911975
Chaperones and folding catalysts [BR:
char03110
]
Heat shock proteins
HSP60 / Chaperonin
105911975
Mitochondrial biogenesis [BR:
char03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
105911975
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
105911975
Exosomal proteins of other body fluids (saliva and urine)
105911975
Exosomal proteins of breast cancer cells
105911975
Exosomal proteins of colorectal cancer cells
105911975
Exosomal proteins of bladder cancer cells
105911975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
105911975
NCBI-ProteinID:
XP_012696339
Ensembl:
ENSCHAG00000022870
UniProt:
A0A6P3WE44
LinkDB
All DBs
Position
21:complement(18858314..18865326)
Genome browser
AA seq
579 aa
AA seq
DB search
MLRLPTLMKQARPVCRALAPHLTRAYAKDVKFGADARALMLKGVDLLADAVAVTMGPKGR
TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYQNIGAKLVQDVANNTNEEAGDGTTTATVLA
RAIAKEGFDTISKGANPVEIRRGVMFAVETVIAELKKLSKPVTTPEEIAQVATISANGDS
EIGNIISNAMKKVGRNGVITVKDGKTLHDELEVIEGMKFDRGYISPYFINTPKGQKVEFQ
DAFLLLSEKKISSVQSIVPALEIANQQRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
KAPGFGDNRKNQLRDMAVASGGTVFGDELVGLALEDVQAHDFGKAGEVQITKDDTLILRG
RGDPAAIEKRITEIAEQLDNTTSDYEKEKLNERLAKLSDGVAVLKIGGTSDVEVNEKKDR
VTDALNATRAAVEEGIVPGGGCALLRCIPALDALVPVNADQKIGIDIIRRSLRVPAMTIA
KNAGVEGALVVEKILQLDGMMGYDAMQGEYVNMVEKGIIDPTKVVRTALLDAAGVASLLS
TCEAVVVEIPKDEKEGGMPGGMGGMGGMGGMGGMGGGMF
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgtttacctactttgatgaaacaagcccgaccagtgtgcagggcgttagccccc
cacctgactcgtgcctacgccaaagatgtcaaattcggggctgatgcacgcgcccttatg
cttaaaggggttgacctgctcgcggacgctgttgcagttaccatgggacccaagggtcgc
acagtcatcattgagcagagctggggaagtcccaaggtcaccaaggacggtgtgacagtg
gccaagagcattgaccttaaggacaaataccaaaacattggtgccaagctggtacaggat
gtggcaaacaacaccaatgaggaggctggagatggcacaaccactgccacagttctggcc
cgtgccatcgccaaagagggctttgacacaatcagcaagggtgccaatcccgtggaaatc
cgccgcggagtgatgtttgcggtggaaacggtcatcgccgagctgaagaagctgtcaaag
ccagtcaccacaccggaagagatcgctcaggttgcaaccatatcagccaatggagacagc
gagattggaaacatcatctccaacgccatgaagaaagtgggtcgtaatggtgtcatcaca
gtgaaggatggaaagacgctacacgacgagctggaggtcatcgagggcatgaagttcgac
cgcggctacatctccccatacttcattaacactcccaaaggtcagaaggttgagttccag
gatgccttcctgcttctcagtgagaagaagatctccagtgtgcagagcatagtgcccgct
ctggagatcgccaaccagcagcgcaaaccccttgtcatcatcgctgaggacgtcgacgga
gaagcactcagcaccctcgtccttaatcgactgaaggttggcctccaggttgtggccgtg
aaggcacctggatttggagacaacaggaagaaccagctgagggacatggctgtcgcctct
ggaggcacagtgtttggggatgagttggtgggcttggctctggaggacgtccaggctcac
gacttcggtaaggcgggcgaggtgcaaatcaccaaggacgacacgttgatcctgaggggc
cgcggtgaccccgcagccatcgagaaacgcatcacagagatcgcagagcagctggacaac
accaccagcgattacgagaaagagaagctgaacgagcggctggccaagctctcggatggc
gtggctgtgctgaagattggtggaactagtgatgtggaggtcaatgagaagaaggaccgt
gtgacggacgccctgaatgccactcgtgcggcggtggaggagggcatcgtgcccggcggt
ggctgtgccctgctgcgctgcatccctgctctggacgcccttgtgcccgttaacgctgac
cagaagatcggcattgacatcatccgtcgttccctccgcgtgccggccatgacgatagcg
aagaacgctggggtggagggcgctctggtggtggagaagatcctgcagctggacggcatg
atgggctacgacgccatgcagggcgagtacgtcaacatggtggagaagggcatcatcgac
cccaccaaggttgtgagaacagcgctgcttgatgctgcaggtgtggcctctctcctctcc
acttgcgaggcagtagtcgtggagatccccaaggatgagaaggagggcggcatgccaggt
ggtatgggcggaatgggaggaatgggcggcatgggaggtatgggtggaggcatgttctaa
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