Clupea harengus (Atlantic herring): 105912026
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Entry
105912026 CDS
T09045
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04120
Ubiquitin mediated proteolysis
char04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
105912026 (syvn1)
04120 Ubiquitin mediated proteolysis
105912026 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105912026 (syvn1)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105912026 (syvn1)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105912026 (syvn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING-like
LHC
zf-HC5HC2H
FANCL_C
zf-Nse
Motif
Other DBs
NCBI-GeneID:
105912026
NCBI-ProteinID:
XP_031442732
Ensembl:
ENSCHAG00000023821
UniProt:
A0A6P8GW32
LinkDB
All DBs
Position
20:complement(3477752..3484869)
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AA seq
633 aa
AA seq
DB search
MVRATLVTATSLVLTGAVVAHAYLLKNQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWIFHFRVLSLMVLLAILDFLFVNHACHSIITRGASVQLVFGFEYAI
LMTMVLTTFIKYMLHTIDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASQPNQMPAPPPAQAPAPAPPANAQ
VPVPGNAPGMMPHFPPGLFPFWGPFPGAAPPAAAPGAQAAADAPQTGSGSTQAQAQGSGT
SAQPNAEAPVPGGAMAGFPFNFPPPPFPSAPWLPMPPPPPFMSSMPPPPASLSSMSDTEL
RELEQEGRRGLEARLQCLHNIHTLLDAAMLNIHQYLTTVATLSPPRTEASAGEAPAAEAP
AAEAPVGEAPVGEAPGPSTSPNTNSTEEASSQETPAQSPEPVLGATGFSQPDSTTEEEKL
MEGEAEDADGEPNAAELRRRRLRKLETTPPLDH
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgagcaaccctggttacagccaccagtctggtgttgacgggagcggtggttgcc
catgcctatcttcttaaaaaccaattctaccccacagtggtgtacctcactaagagcagc
cccagcatggctgttttgtatatccaagcttttgtattggtgtttctgttggggaaattt
atgcgtaaagtcttctttggacagctgcgggctgccgaaatggagcacctgatcgagcgc
tcgtggtacgctgtgactgagacgtgcctagccttcactgttttccgggatgatttctcc
cctcgttttgtggccctcttcacattgttgctgttcctcaagtgctttcattggttggca
gaggacagggttgactttatggagaggagtccaaacatctcttggatcttccactttagg
gtgctgtctctcatggtgttgctggcaatattggacttcctttttgtaaaccatgcttgt
catagcattatcacaaggggggcctcggttcaactggtgtttggatttgagtatgcaatt
ctgatgactatggttctcacgacctttatcaagtatatgcttcatacgattgacctccag
agtgagaatccatgggataacaaggcggtgtatatgttatacactgaactcttcacaggt
ttcattaaggtgctgctgtatatggccttcatgaccatcatgatcaaagtgcataccttc
cctctgttcgccatccgccccatgtatcttgctatgaggcaattcaagaaagctgtgact
gatgctattatgtcccggcgagccatccgcaatatgaacacactctatcctgatgccaca
cctgaagacctccaggcctccgacaatgtttgcatcatctgtcgagaggagatggtgacc
ggagccaaaaaactgccctgcaaccacatcttccactccagctgcctgcgctcctggttc
cagagacagcagacctgtcctacgtgtcgcatggacgtcttgagagcctctcagcccaat
cagatgccagccccgccccctgctcaggctccagccccagcgccacccgccaacgcacag
gtccctgtgcccggcaacgcccctgggatgatgcctcacttcccccccgggctcttcccc
ttctgggggccgtttcctggggctgcccctcctgccgctgcgcctggcgcccaagctgct
gcggatgccccccagaccggctctggttccactcaggctcaggctcaagggagcggcaca
tcagcccaacccaatgcagaggctcccgtccctggaggtgccatggcgggtttccccttc
aacttcccccctcctccgttcccctccgcaccatggctgccaatgccaccaccgcctccc
ttcatgtcctcgatgcctccgccgccggcctccctgtccagcatgtctgacacggagctg
cgggagctggagcaggagggccgacggggcctggaggcccgactgcagtgcctccacaac
atccacacgctcctggacgccgcaatgctcaacatccaccagtacctcaccaccgtggcc
actctcagcccccctcggactgaagccagcgctggagaggcccctgctgcagaggcccct
gctgcagaggcccctgttggagaggcccctgttggagaggcccctgggccgtctacctcc
ccgaacaccaacagcaccgaggaggcctccagccaggagacccctgctcaaagccctgaa
ccggttttgggggcaacgggtttctctcaaccagactccaccacagaggaagagaagctg
atggaaggagaggcggaggatgccgatggggagcccaacgctgcagagctccggcggaga
cgcctacgcaagctggagaccactccacctcttgaccactga
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