KEGG   Clupea harengus (Atlantic herring): 105912234
Entry
105912234         CDS       T09045                                 
Symbol
cpne1
Name
(RefSeq) copine-1 isoform X1
  KO
K24526  RNA-binding protein 12
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:char03041]
    105912234 (cpne1)
Spliceosome [BR:char03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    105912234 (cpne1)
SSDB
Motif
Pfam: RRM_1
Other DBs
NCBI-GeneID: 105912234
NCBI-ProteinID: XP_012696616
Ensembl: ENSCHAG00000015841
UniProt: A0A6P3WEH8
LinkDB
Position
5:complement(4818497..4837502)
AA seq 884 aa
MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGEHGEAFIVFATDEDARLGMMRT
GGSIKGSKVSLLLSSKTEMQNMIELSRRRFEAGSVEGAAGNGNRPGPPATSGGSGRGSMP
TSGQGFSNTSTSATTAVSAHEPVSIKNVSTFAPTSMGNMPSFNNNFSSPSITTMGSTMTT
AMSSLNSVPPPIPPLPSMQSLPPMPSMPPLPGPPPVSSHPSVQTVSPLSAVPPVPPMSHM
PHLSAMPPFNPGVPPPGGPGLATSGPPMSLGSPNHMFLNPMNLNPLNLQAHLKPSITNPD
EYFVHLQGLPFTANELEVREFFHGLGVENVRVLRDNMGRSSGRALVKFFAPQDAYEAIKR
NSAMLGQRYVEISPATERQWRECGGGFLGQNQSKPGHNADQDRHRRGSSSSASPSGRERA
RSRSPHRQEFCVYLKGLPYEAENKQIFEFFKNLDIVEDSIYIAYGPNGRATGEGFVEFRN
EMDYKAALGCHMQYMGSRFIQVHPITKKAMFEKIDSIRKRMQGTQGDQKSSSTEGGKNPR
NCAHVSNIPYNVSKKDVRLFLNGIQLFEDTLKVLADTNGNGLGQAVVQFKSEEEALKAER
LHRQKLNGRDAFVHLVTFDQMKEIERNPPPQSRRGQKSQGNVHSHAQGQGQVQAQAHVHA
YPAMSGEEFNFLRNSVGNLNNGPPFVAQFSAPGNGLAGPPPLPPLGSTLGDVTLGVPPPL
VGAHLPGQVLEPPGFRPGPGSNGPPGFVGGPESLRGIPPFDNGSRKGGNHNRGGQQGPTG
GPQPSFGSASDNLRGPSGGGGPSNPRPTIVKIQNMPFTVTVDEILDFFYGYQVLPGSVCL
QFSEKGLPTGEAMVAFESHDEAMSAVMDLNERPIGARKVKLTLG
NT seq 2655 nt   +upstreamnt  +downstreamnt
atggctgtggtcatccgcttgcagggtctccccattgtggcagggaccatggacattcgc
catttcttctctggattgaccatcccggatggtggggtgcatattgtagggggtgaacat
ggcgaagcatttattgttttcgccacagacgaagatgccaggcttggtatgatgcgaaca
ggggggtccatcaaaggttctaaggtatcattgttgctgagcagcaagacggaaatgcag
aacatgattgagcttagccgcaggcggtttgaagctggcagtgtagagggagctgcagga
aacggtaacagaccaggccctcctgccacctctggtggaagtgggagaggtagcatgccc
acttctggtcaaggtttcagtaatacatcaacttctgccactacagctgtttctgcacac
gagccagttagcatcaaaaatgtgtctacctttgcccccactagcatgggcaacatgccc
agtttcaacaataacttcagtagccccagcatcacgacgatgggttccaccatgacaact
gccatgtcctccctaaactctgtaccaccacccataccacccttaccctccatgcaatct
ttaccacccatgccttcaatgccacccttgccaggtcccccacctgtatcatcccatccc
tcagtgcaaacagtttcccctttgtctgcggtgccacctgtccctccgatgtctcatatg
ccccacctgtctgcaatgcctccttttaatccgggtgtccctcccccaggtggacctggt
ctggctacatctggaccgcctatgtccctgggaagccccaaccacatgttccttaacccc
atgaaccttaacccccttaatctccaggctcacttgaagccatcaattaccaaccctgat
gagtatttcgttcacctgcaaggcctgccctttactgcaaacgagttagaagtaagagaa
ttctttcatggattgggtgttgaaaatgttcgtgtccttagagataacatgggcaggagc
agcggtcgagcattagttaaattctttgcgccccaggatgcttatgaggcaataaaaaga
aactcggcaatgctagggcaaaggtatgtggagatatccccagcaacagagaggcagtgg
cgagagtgtggcggtggatttcttggccaaaaccagtccaaacctggtcataacgcagac
caggaccgccatcgccgtggaagttcaagttctgcgtctccttcaggacgtgaacgtgca
aggtccaggtctccacataggcaagagttttgtgtctatctgaaagggcttccatatgaa
gctgaaaacaaacagatatttgaatttttcaaaaacctggacattgttgaagacagcatt
tacattgcttatggacctaacggtagagcaacaggggaaggttttgtagagttcagaaat
gagatggactacaaagctgcccttggctgccatatgcagtacatgggtagtcgattcata
caggtccaccccatcactaagaaggcgatgtttgaaaagatcgattccattcgcaaaagg
atgcagggtacccaaggtgatcagaaaagtagttccacagagggaggaaaaaacccaagg
aattgtgcccacgtttcaaatatcccatacaatgtgtccaagaaagatgtacgtctcttc
ttgaatggaattcagttatttgaggataccttaaaagttctagctgacactaatggcaat
ggccttggccaagcagtagtgcaatttaaatctgaagaagaagcacttaaagcagaaagg
ttgcatagacaaaagcttaatggcagagatgcctttgttcatttggtcacatttgaccag
atgaaagaaatagaaagaaacccaccacctcagtccaggaggggtcagaaatctcaaggt
aatgtccattcacacgcacaagggcagggccaggttcaagcgcaggcccatgtgcacgct
tatcctgccatgagtggggaggagttcaacttcctcagaaacagtgtaggaaacctaaac
aacggccctccttttgttgctcagttcagtgccccaggcaatggccttgctggcccccct
cccttgccacctcttggttccacgctgggagacgtcacacttggtgtgccaccaccattg
gtcggtgctcacttgcccggacaagttcttgagccgccagggttccgcccaggaccaggt
agcaatggacctcctggttttgtgggtggcccagagagtctgagaggtatcccacctttc
gataatgggtctaggaaagggggcaaccacaacagaggagggcaacaaggccccactggg
ggccctcaaccttcctttgggtccgcctctgacaatctgagagggccatctgggggtggt
ggccccagtaaccctcggcccaccattgtcaagattcagaatatgccctttacagttaca
gtagatgagatacttgattttttctatggctatcaagtgctgcctggttctgtatgcctt
cagttcagtgaaaaagggctgccaactggcgaggcgatggttgcatttgagtcccacgat
gaggctatgtctgcagtcatggatttgaatgaaagacccattggagcaaggaaagtgaag
ttaactttgggatag

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