Clupea harengus (Atlantic herring): 105912244
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Entry
105912244 CDS
T09045
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a isoform X2
KO
K13091
RNA-binding protein 23/39
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105912244 (rbm39a)
Spliceosome [BR:
char03041
]
Common components
Common spliceosomal components
General mRNP proteins
105912244 (rbm39a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RBD_DEAH11
RRM_7
RSRP
Motif
Other DBs
NCBI-GeneID:
105912244
NCBI-ProteinID:
XP_012696632
Ensembl:
ENSCHAG00000017579
UniProt:
A0A6P3WEH6
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Position
5:complement(4847056..4855282)
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AA seq
528 aa
AA seq
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MNSSVNCQKMKDDIKSVSTNGHEERSKKKKKSRSRSKSREKERKKSKSRDRERKRSHERD
RERKRSRSKERRSKDHKRSRSRSRERGGRYRAPFSGPKLNGGSRGKAGPPPGIKLSRKQR
SRSKSPFRKDKSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRM
ISDRNSRRSKGIAYVEFVDVTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAAAMANNLQK
GTAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFADAECA
KKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDNDELERTGIDLGTTGRLQLMARLA
EGTGLQIPPAAQQALQMSGSIQMGAVAAVTAAMNPGLNLNLNLPSMSSNQALNLPSQPIA
THCFQLSNMFNPQSENNPGWDIEIQDDVIEECNKHGGVVHIYVDKNSAQGNVYVKCPTIP
GAMAAVNALHGRYFAGKMITAAYVPLPTYHNLFPDSVTATQLLMPTRR
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgaattccagtgtgaactgtcaaaaaatgaaggatgacatcaaatctgttagcaccaat
ggccacgaggaacgcagcaaaaagaagaaaaagagccggagccgcagcaagagccgggaa
aaggaacgcaagaagagcaagagccgggatcgggaaaggaagcggagtcatgagcgcgac
agagaacgcaaacgtagccgtagcaaggaacgccgtagcaaggatcacaaacgcagccgc
tctcgaagcagagagcgcggaggccgctaccgggccccgttttctggaccgaaattgaac
ggtggttccagggggaaggctggcccaccacctggcatcaaactaagccgtaagcaaaga
tccaggagcaaaagccctttccggaaagacaagagccctgtgagacagccgattgataac
ctgactccagaggagagagatgctcggacagtgttctgcatgcagctggctgcccgaatc
cgcccccgagatctggaggagttcttctcagctgtgggcaaagttcgagacgtgaggatg
atatcagacagaaactccagaaggtctaaaggcatcgcctacgtggagtttgtggacgtg
acttctgtgcctttggccatcggtctgtccgggcagaggctactgggggtgcccatcatt
gttcaggcatcacaggctgagaagaacagagctgcagccatggccaacaacctccagaag
ggcaccgctggacccatgcgcctctatgtgggctcactccacttcaacatcacagaggac
atgctccgaggcatctttgagcctttcggcaggattgagagcattcagcttatgatggac
agtgagacaggcagatctaaaggatacggctttatcacgtttgctgacgcagagtgtgct
aagaaagccttggagcagctgaacggttttgagctggccggtcgacccatgaaagtggga
cacgtcaccgaacgcacagacgcctcctctgccagctccttcctcgacaacgacgagctg
gagcgcacaggcatcgacctcggcaccaccgggcgcttgcagctcatggccagactggca
gaaggcacaggcctacagattcccccggctgcacagcaggctctacagatgagcgggtca
atacagatgggagccgtggctgcagtcactgcggccatgaaccctggccttaacctcaac
ctcaacttacccagcatgagctcaaaccaggctctcaaccttccctcccagcccatcgcc
acacactgcttccagctgtccaacatgttcaaccctcagtcggagaacaaccctggctgg
gatattgagattcaggacgatgtcatagaagagtgcaacaaacacggcggagtcgttcac
atatatgtagacaaaaattcagctcaaggtaacgtgtacgtaaaatgcccaaccatccct
ggagcaatggcagcagtaaacgcgttacatggacgatattttgcaggaaaaatgattaca
gcagcatatgttcctctccccacgtaccacaacctcttccccgactcggtcaccgccacg
cagctactcatgcccactcgccgatga
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