Clupea harengus (Atlantic herring): 105912317
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Entry
105912317 CDS
T09045
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04120
Ubiquitin mediated proteolysis
char04137
Mitophagy - animal
char04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
105912317 (prkn)
04120 Ubiquitin mediated proteolysis
105912317 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
105912317 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
105912317 (prkn)
04121 Ubiquitin system [BR:
char04121
]
105912317 (prkn)
03029 Mitochondrial biogenesis [BR:
char03029
]
105912317 (prkn)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
105912317 (prkn)
Membrane trafficking [BR:
char04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
105912317 (prkn)
Aggrephagy
Other aggrephagy associated proteins
105912317 (prkn)
Xenophagy
Other xenophagy associated proteins
105912317 (prkn)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
105912317 (prkn)
Mitochondrial biogenesis [BR:
char03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
105912317 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR_1
IBR
Rad60-SLD
ADAMTS_CR_3
Rad60-SLD_2
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
105912317
NCBI-ProteinID:
XP_031434472
Ensembl:
ENSCHAG00000008587
UniProt:
A0A6P8GG84
LinkDB
All DBs
Position
13:complement(20435973..20504141)
Genome browser
AA seq
457 aa
AA seq
DB search
MIVYVRFNSSHGFPVELEGGASVAELKEEVGRVQGVEPEQLRVIFAGRELQSDSTLQGCD
LPEQSTVHVVLPPAGPARRSEMVLQQRLGRGVECLTRLDLSASRLHTSSTGLAVILEDQQ
HSPDNSLTHTEPKPHSSFYVFCKSVCKAIQPGKLRVRCKTCKQGTLTLSRGPSCWDDVLL
PDRIHGVCQSQECEGRQAEFYLKCASHPTCDEDTSVALDLIMPNVRAVPCIACTDIMSPV
LVAQCPDRHVICLECFHMYCVTRLNERQFIHDPVVGYSLPCAAGCPDSLIKETHHFWVLG
EEQYERYQRYAAEECVLVMGGVLCPAPGCGAGLLPEDDRRRLQCELVDGLGCGFVFCRDC
KEEYHEGACRQQLTPATGITPQGYVVDEEAALRARWDQDSQQTIEETTRPCPRCKVPIEK
NGGCMHMVCPRAQCKFEWCWLCRVEWNRECMGNHWFG
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtatgtgcgctttaactccagccatggtttcccggtggagctggagggcggg
gccagcgtagccgagctgaaggaggaggtggggcgtgtgcagggggtggagcctgagcag
ctccgggtcatcttcgccgggagagagctgcagagcgacagcacactacagggctgtgac
ctgccggagcagagtacagtgcatgtggtgctgccccctgcaggcccagcacggcgtagc
gagatggtgctccagcagcggttagggaggggagtggagtgcctgacccgactggacctc
agcgcctcccggctacacaccagctccaccggcctcgccgttatactggaggaccagcaa
cacagtccagacaactcgctcacacacacagagccaaagcctcacagtagcttctatgtg
ttctgcaagagtgtgtgtaaggcaatccagcctgggaaactacgtgtgcgctgcaaaacc
tgcaaacagggcacgctaacactcagccgggggccatcgtgctgggacgatgttttgctc
cctgatcggatccatggagtgtgccagtctcaggagtgtgagggcagacaagcagagttc
tacctgaagtgtgcgtcccacccaacctgtgatgaggacacgtctgtagccctggacctc
attatgccaaacgtcagagctgtcccctgcattgcctgcacagacatcatgagtccagtg
ctggtagcccagtgtcctgatcgccatgtcatctgtctggagtgtttccacatgtactgt
gtcacccgactcaacgagcggcagttcattcacgaccctgtggttgggtactctctgcct
tgcgcagcagggtgtccagactctctgattaaagagacgcatcacttctgggtactggga
gaggagcagtatgagcggtaccagcggtacgcagcagaggagtgtgtgctggtgatgggg
ggtgtgttgtgtccagcgccgggctgtggagctggtctgctgccagaggacgaccgcagg
aggcttcagtgtgagctggtcgacgggctgggctgcgggtttgtgttctgccgtgactgt
aaggaggagtaccatgaaggagcgtgtcggcaacagttgaccccggcaacagggatcaca
cctcagggttatgtggtggatgaggaggcggctctgcgtgcccgctgggatcaggactct
cagcagaccatagaggagaccacacgcccctgccccagatgcaaggtccccatagagaag
aacggtggctgcatgcacatggtgtgcccgcgggcccagtgtaagtttgaatggtgttgg
ctctgccgcgtggagtggaacagggagtgcatgggcaaccactggttcggatga
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