Clupea harengus (Atlantic herring): 105912423
Help
Entry
105912423 CDS
T09045
Symbol
cnot4b
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105912423 (cnot4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105912423 (cnot4b)
03019 Messenger RNA biogenesis [BR:
char03019
]
105912423 (cnot4b)
04121 Ubiquitin system [BR:
char04121
]
105912423 (cnot4b)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105912423 (cnot4b)
Transcription factors [BR:
char03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
105912423 (cnot4b)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105912423 (cnot4b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105912423 (cnot4b)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105912423 (cnot4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
Spt20_SEP
Rtf2
DZR_2
Torus
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
105912423
NCBI-ProteinID:
XP_012696834
Ensembl:
ENSCHAG00000026630
UniProt:
A0A6P3WEV4
LinkDB
All DBs
Position
16:19291133..19327986
Genome browser
AA seq
889 aa
AA seq
DB search
MSRSPELKDDLTECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQQIKNEKKQKQNERKQKITENRKHLASVRVVQRNLLFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALKAIQSVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLFKLNPHFVQTSTIGSERTKGKSSSTQRPNSNNKDSWPSLQPTGKTANGLTEHRKSP
PLDGGSDSDHMTPDGQDSDLGLGSVPALSPFSSNCDPASPTDKSSEAISIGNGETTQQMP
CSDSPSPPPGLCKPSLVAPMSVAGLTARSPFEGAATESQSLFSDNSNFRHPNPVPSSLPG
FPSSPHSGGSEWPTAPEPQSLFASDTIPVSSSTDWQAAFGFGSSSQQQQQDDELGFDPFD
ITRKALADLIEKELSVQDSPLGLGLHHSPFHHHHHHHNHHYHPGLPSALPPALPPASPSS
SSKVGPSGASHFLLNCAPHQPLPQSPPRYSQLLLQQQQQQQQQQQQQQQQQQQQQQQRSV
YSSFSFPGQTATVPSHLGSGPAAATASRLPWLTFPMRNNPTHFNHAAAGPATTTATSIAA
ASANVPPSMVGGFLDLSLPSQQRQHSTGLGGIAISESSGPVESINVKEWQDGLRALLPNI
NINFGGLPNSSSSSSSSSSSSSSSSSSSSSSSICVNHTGAPSSTSGISHSLSWDSTASWM
DPAIITGIPASSGNSLDSFQDDNPPHWLKSLQALTEMDAPSSSLTAGPLQPPHSVPFAFP
LHRPGWAPYPATANPPTQFHSPPPGFQSSFRPTAQTATDLLQSAGMDRH
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcagccccgagctgaaggatgacctcacggagtgccccctgtgcatggagcct
ctggagattgacgacgtcaacttcttcccctgcacctgcggctaccagatctgccgcttc
tgctggcaccgcatccgcacagacgagaacggcctctgccccgcctgcagaaagccttac
ccagaagacccggcggtgtacaagcccctgtcccaggaggagctgcagcagataaagaac
gagaagaagcagaagcagaacgagcgcaaacagaagatcacggagaaccgcaagcacttg
gccagcgtgcgcgtcgtgcagcgcaacctgctcttcgtggtggggctgtcgcaaaggctt
gcggaccctgaggttttaaagaggccagagtattttgggaagtttgggaagattcacaaa
gtggtcatcaacaacagcacatcatacgcaggctcacagggtcccagtgccagtgcatac
gtcacttatatacgctcagaagatgcccttaaagctatacaaagcgtcaacaatgtggta
gttgatggcagaactcttaaggcttctttaggtacaacaaaatactgcagttattttctg
aagagcatgcagtgtccaaaaccggactgcatgtatctacatgagttgggggacgaggcg
gctagtttcacaaaggaggagatgcaggcgggaaagcatcaagaatacgaacagaaactc
ctccaggatctcttcaaactgaaccctcacttcgtgcagacctcaaccataggcagcgag
aggacgaagggcaagtccagctccacacagaggcccaacagtaacaacaaagactcgtgg
ccatcgttacaaccgacagggaagacagccaatgggctgacagaacaccgcaaatccccg
cccttggatggcggctcagactccgaccacatgacgcccgatgggcaggactcggacctg
ggcctgggctccgtccccgccctctcgcccttctcctcgaactgtgaccccgccagcccc
accgataaatcttcagaagccatcagcataggaaacggagaaactacacagcagatgccc
tgcagtgactcgccgtcgccccctcctggtctgtgcaagccgagcctggtggcacccatg
agtgtggccgggctgacggctcgctcgcccttcgagggtgcggccacagagtcgcagtcg
ctcttctcggacaacagcaacttccggcaccccaaccccgtgcccagcagcctgcccggc
ttccccagctccccgcacagcgggggcagcgaatggcccaccgcccccgaaccacagagc
ctctttgcctcagacaccatcccggtgtcgtcctccacagactggcaggcggcgttcggc
ttcggctcgtcctcccagcagcagcagcaggatgacgagttgggcttcgacccgttcgac
atcacgcgcaaggccttggctgacctcatcgagaaggagctctctgtgcaggactccccg
ttgggtctggggctccaccacagcccctttcaccaccatcaccaccaccacaaccaccac
taccaccctggcctgccctccgctctgccccccgccctgccccctgcctccccctcgtcc
tcctctaaagtggggccttctggtgcgtctcatttccttctgaattgtgccccccaccag
cccctccctcagtccccaccacggtactcccagctgctgctccagcaacagcaacaacaa
caacagcaacaacaacaacagcaacaacaacaacaacaacagcagcagcagcgctctgtt
tacagctccttcagctttcccggtcagactgctaccgttccctcacacctgggctcgggc
cctgctgctgctactgcctcccgcctgccctggttgacctttcccatgcgcaacaacccc
acgcacttcaatcacgccgctgccggtccagccacgaccaccgccacctccattgccgct
gcctctgccaatgtgcctccctccatggtcggcggcttcttggacttgagcttgccgtcg
cagcagcggcaacacagcacagggctgggaggcatcgccatctcagaaagcagtggcccg
gtagagagcataaatgtgaaagagtggcaggatggtctgcgcgccctcctgcccaacatc
aacatcaactttggcggcctgcccaactcctcgtcttcctcttcctcctcctcctcctca
tcttcctcctcctcttcatcctcctcctcctcctccatctgcgtcaaccacacgggggcg
ccatccagcacctcaggcatctcgcacagcctgagctgggacagcacagccagctggatg
gaccccgccattatcacaggtataccggcatcctcgggcaacagtctggactcgttccag
gacgacaacccgccccactggctcaagtcactgcaggcgctcaccgagatggacgctccc
tccagcagtctgaccgccggccccctccagcccccgcacagtgtgcccttcgccttcccc
ctccacagacccggctgggccccctacccggccacggccaacccccccacccagttccac
tcaccacccccaggcttccagagctccttcagacccacagcccagaccgctacagatctg
ctacagagcgctggcatggaccgacactag
DBGET
integrated database retrieval system
