Clupea harengus (Atlantic herring): 105912443
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Entry
105912443 CDS
T09045
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105912443 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105912443 (dhx15)
03009 Ribosome biogenesis [BR:
char03009
]
105912443 (dhx15)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105912443 (dhx15)
Spliceosome [BR:
char03041
]
Complex A
U2 snRNP components
U2 related factors
105912443 (dhx15)
Complex B
105912443 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105912443 (dhx15)
Ribosome biogenesis [BR:
char03009
]
Eukaryotic type
90S particles
Helicases
105912443 (dhx15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
Flavi_DEAD
SRP54
AAA_29
Motif
Other DBs
NCBI-GeneID:
105912443
NCBI-ProteinID:
XP_012696859
Ensembl:
ENSCHAG00000018869
UniProt:
A0A6P3WEW7
LinkDB
All DBs
Position
18:complement(27014859..27035704)
Genome browser
AA seq
781 aa
AA seq
DB search
MSKRHRLDLGDDYSSNKKRTSSDGKERDRDRDDRAKDRERDRDRDRDRDRGGERDRERDG
RGGSGGGGSLGLGLGAGGVPMGLAGGVLLPPLKQTAMHQQINPFTNLPHTQRYYDILKKR
LQLPVWEYKERFNDILTRHQSFVLVGETGSGKTTQIPQWCVDMVRGVAGPKRGVACTQPR
RVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERY
GVIILDEAHERTLATDILMGVLKEVVRQRSDLKIIVMSATLDAGKFQVYFDSCPLLTIPG
RTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEDEGDVLLFLTGQEEIDEACKRIKREVD
DLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVV
FVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKTFRLYTEKAYKTEM
QDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGD
LTELGSMMAEFPLDPQLAKMVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESK
MRFAHIDGDHLTLLNVYHAFKQNHESTQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLP
RRSTEFTSRDYYINIRRALVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWV
LYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQ
Y
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacatcgcttggatctaggcgatgattattcatcgaataagaaaagaacg
tcctccgatggaaaggaacgtgacagagaccgtgacgaccgcgcgaaggaccgcgagcgc
gacagggaccgcgacagggaccgagaccgggggggggagcgcgacagagagcgggacgga
cgcggcgggtcgggaggcggaggctcgctggggttgggcctgggggccggcggtgtgccc
atgggtctggccggaggcgtcctgctgccccccctgaagcagacggcgatgcaccagcag
atcaaccccttcaccaacctgccgcacacacagcgatactacgacatcctgaagaagcgc
ctgcagctgcccgtgtgggagtacaaggagcgcttcaacgacatcctcaccaggcaccag
tccttcgtcctcgtgggcgagacgggctcggggaaaacaacacagatcccccagtggtgc
gtggacatggtgcgcggggtggcggggcccaagcggggggtggcgtgtacgcagccgagg
cgagtggcggccatgagcgtggcccagcgcgtggcggacgagatggatgtcatgctcgga
caggaggtcgggtactcaatccgatttgaagactgcagctccgccaagaccatcctgaag
tacatgactgatggtatgctactgagagaggcgatgaatgaccctctcctggagaggtac
ggagtcatcatcctggacgaggctcacgagaggacactcgcaacagacatcctgatggga
gtactgaaggaagtggtcagacagcgctcagatctcaagatcatcgtgatgagcgccacg
ctggatgcagggaagttccaggtgtatttcgacagctgcccgctgctgaccatccccggc
cgcacgcaccccgtggagatcttttacacgccggagcccgagcgggactacctggaggcc
gccatccgcaccgtcatccagatccacatgtgcgaggaagacgagggagatgtgctgctc
ttcctcaccggacaggaggagattgacgaggcgtgcaagcggatcaagcgtgaggtggat
gatctgggtcctgaggtgggcgacattaagatcatccccctctactccactctgcccccc
cagcagcagcagcggatctttgagcccccgcccccgcgcaagcccaacggggccatcggc
aggaaggtggtggtatccactaacatagctgagacgtccctgaccattgatggtgttgtg
tttgttattgacccaggattcgccaagcaaaaggtgtataacccccgtatcagggtggag
tcgttgctggtgacggccataagtaaagcttcagcgcagcagagggcagggagagctgga
agaacacggccggggaagaccttcagactctacacagagaaggcctacaagacagagatg
caggacaacacgtaccctgagatcctgcgctccaatctgggctccgtggtgctgcagctc
aagaagctgggcattgatgacctggtgcactttgacttcatggaccccccagctcctgag
accctgatgcgagcgctggagctcctgaactacctggcagccctgaacgacgacggagac
ctgacggagctgggttccatgatggccgagttccccctcgacccccagctggccaagatg
gtcatcgccagctgtgagttcaactgctccaacgagatcctgtccatcacagccatgctg
tcagtcccacagtgcttcgtccggccaacggaggccaagaaggctgcagacgagtccaag
atgcgcttcgcacacatcgatggggaccacctgaccctgctcaacgtgtaccacgccttc
aaacagaatcatgagtcaacgcagtggtgttatgataactttgtgaactaccgctctctg
atgtcagctgataacgtgcgtcagcagctgtcacgcatcatggaccgcttcaacctgccg
cgccggagcacggagttcaccagcagagactactacatcaacatcagacgggctctagtc
accggcttcttcatgcaggtggctcacctggagcggacgggtcactacctgacggtgaag
gacaaccaggtggtgcagcttcatccctctacggtgctggaccacaagccagagtgggtc
ctctacaacgagtttgtgctcaccaccaagaactacatccgcacgtgcaccgacatcaaa
ccagagtggttagtcaagattgccccccagtactacgagatgggcaactttccacagtgt
gaagccaagagacagctggagaggatcgtcgccaagctccaaaccaaggaatactcccag
tactga
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