Clupea harengus (Atlantic herring): 105912484
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Entry
105912484 CDS
T09045
Symbol
zgc:163098
Name
(RefSeq) U2 snRNP-associated SURP motif-containing protein isoform X3
KO
K12842
U2-associated protein SR140
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105912484 (zgc:163098)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105912484 (zgc:163098)
Spliceosome [BR:
char03041
]
Complex A
U2 snRNP components
U2 related factors
105912484 (zgc:163098)
Complex B
105912484 (zgc:163098)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Surp
RRM_1
CID
cwf21
CTK3
RRM_7
SET_assoc
Motif
Other DBs
NCBI-GeneID:
105912484
NCBI-ProteinID:
XP_012696918
Ensembl:
ENSCHAG00000025808
UniProt:
A0A6P8FHP6
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Position
8:complement(15599570..15616496)
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AA seq
887 aa
AA seq
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MADKKSKSASVKRTLTRREQDVMKKKEEEKAAEVFEEFLASFDSNDKSGVKTFVRGGIVN
ATKEEQAAEVKKSKLYRPSTKFSPPVSQNAVPPSSPDLKKSAVKKKTEEKKKSNLELFKE
ELKQIQEEREERYKRKKGDPGASLPDLDAPLSRRSIFDDDPALPNSTNLYIGCINPKMNE
EMLCKEFGKYGPLASVKIMWPRTDEERTRVSNRGFVAFMTRKDAERAMAALDGKTIMGFE
MKLGWGKPVRIPPQPLYTPIGVLKTSTPPPPSGLPFNAQPRDRFRNDFTKPWSRSKDEFE
KTLSEAVVKVVIPTERHLLGLIHRMIEFVVREGPMFEAIIMSKEKNNTDFRFLFENKSQE
HVYYRWKLYSILQGESPGQWRTADFRMFRSGSIWRPPLLNPYLHGDEEVREDELPPTQEE
ELRKGQLKTEHREQLESLLQKLTPRRDEVGDAMLFCLEKAEAAEEVVACISESLSLIQTP
LQKKVARLYLVSDILYNSCAKVANASYYRKYFEAKLPQIFGDISEAYRNVRARLQAEQFK
QKIMGCFRAWEDWAIYPESYLIQLQNIFLGLVKPGEEVIERIEVPPPDLDGAPLDGIPLD
GIALDGMPLDGAPLDGTPLDDLDGSPMVWDPASLDGVPVDDIDGVPLGLALDDIDGMPLD
EGSDRDRGLPHARVALSKWERVDDAEPLKSTDADDSRDTKDGEGESDEDSSDGSSSPSKF
DAADFKSSVSSFELSESKRSKLRELEVKVMKFQDELELGKKVRKSGMSVQEQIQHYRNKL
LQKEFEKDEQEKKEKSSQKQKERSKKEEKKERTERTEDRSKMRDKERSKKSEDRERGRDS
DDRRERTKSKSPKRSKRSRSPSPVRKSRRSTSHSPHRSHKKSKKNKH
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaaaaagcaaatccgcgagcgtaaaacgaacactaaccagaagagaacaa
gatgttatgaagaaaaaggaggaagaaaaagcagctgaagtttttgaagaatttctggct
tccttcgacagtaatgataaaagtggtgtgaagacttttgtccgtggtggaattgtgaat
gcaacgaaagaggagcaagcagccgaagtaaaaaagagcaagctgtacagaccatccaca
aaattttcacctccagtttcccagaatgccgtaccaccatcatctccagatctcaagaag
tccgctgtcaaaaagaagaccgaagagaagaagaagagtaaccttgagcttttcaaagag
gagttgaaacaaatccaggaggagcgtgaggagcgatataaaaggaagaagggtgatcca
ggtgcaagcctccctgatctagatgcacctctgtcacggagatcaatatttgatgatgat
ccagcattgcctaactcaaccaacctctacattggctgtattaacccaaagatgaatgag
gagatgctgtgtaaggagtttggcaagtacgggcccctggccagtgtgaagatcatgtgg
cctcgcacagacgaggagcgcacgcgggtctccaaccgaggcttcgtcgccttcatgaca
cgcaaggatgcggagagggccatggctgcattggatggtaagacgatcatgggcttcgag
atgaagctgggttggggcaagccggtgcgcatccctccccagcccctttacacacccatt
ggggtcctcaagacctccacaccgcccccaccctccggcctgcccttcaacgcgcagccc
cgcgaccgtttccgtaatgacttcaccaagccctggagtcgctccaaggatgagttcgag
aagactctgtccgaagccgtagtcaaagtggttatcccaacagaaagacacctcttaggt
ctcatccacaggatgatagagtttgtggtgcgtgaagggcccatgtttgaagcaatcatc
atgagcaaagagaagaacaacacagacttcaggtttctgtttgagaacaagagtcaggag
cacgtgtactaccgctggaaactctactccatcctgcagggcgagtcccccggtcagtgg
aggacggcagacttccgcatgttccgcagtggctccatctggaggccgcccctgctcaac
ccatatctccatggcgacgaggaggtgcgagaggacgagttgccccccacgcaagaggag
gagctgaggaagggccagctgaagacagagcaccgggagcagctggagtctctgctgcag
aaactgactcctcggcgggacgaggttggcgacgccatgctcttctgcctggagaaggcc
gaggctgccgaagaggtggtggcctgcatctcagagtccctgtccttaatccagacgcca
ctgcaaaagaaggttgccagattgtatttggtgtctgatattctgtacaactcctgtgcc
aaagttgccaatgcatcatattacagaaaatactttgaggctaaattgcctcaaatattt
ggagacattagtgaagcctaccgaaacgtacgtgcccgtctacaagctgaacagttcaag
caaaagatcatgggctgcttccgggcgtgggaggactgggccatctacccagagtcctac
ctcatccagctgcagaacatcttcctaggcctggtcaagcccggagaagaggtcatcgaa
cggatagaggtccctccgcctgacctggatggagctcctctagatgggatccctctggac
gggatcgctctggacgggatgcccttagatggggcaccgttagacgggacgcccctggac
gacctggacggctcacccatggtgtgggaccccgcgtcgctggatggtgtgcctgtggat
gacatcgatggggtccccctgggattagctctggatgatattgatggaatgccattggat
gaaggctcagaccgagacaggggtctcccccacgccagagtagccctgtctaagtgggag
cgggtggatgatgcagagcctctaaagagcacagatgcggacgacagtagagatacgaag
gacggagagggagaatctgatgaggacagcagtgacggttcctccagcccatctaagttt
gatgcggccgacttcaagagctctgtctccagcttcgagctctctgagagcaagaggagc
aaactgcgagaactggaggtgaaggtgatgaaattccaggatgagctggaattggggaag
aaggtccgcaagtcaggcatgagtgtccaggaacaaatccagcactacaggaacaagctg
ctccagaaggagtttgaaaaggacgaacaggagaaaaaagagaagtcttcccagaagcag
aaggaacgatcaaagaaggaggagaagaaggagcggacggagaggacggaggacaggagt
aaaatgagggacaaggagaggagtaagaagagtgaagatcgagagaggggaagagactct
gatgacaggagagaaaggacaaagtccaagtctcccaagaggtcgaagcgttcccgctcc
ccgtcacctgtccggaagtcgcggagatcaacgtcccactccccacaccgttctcacaag
aagtccaagaagaacaaacactga
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