Clupea harengus (Atlantic herring): 105912617
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Entry
105912617 CDS
T09045
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X2
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04010
MAPK signaling pathway
char04210
Apoptosis
char04218
Cellular senescence
char04620
Toll-like receptor signaling pathway
char04621
NOD-like receptor signaling pathway
char04622
RIG-I-like receptor signaling pathway
char04623
Cytosolic DNA-sensing pathway
char04625
C-type lectin receptor signaling pathway
char04920
Adipocytokine signaling pathway
char05132
Salmonella infection
char05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
105912617 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
105912617 (nfkb1)
04218 Cellular senescence
105912617 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
105912617 (nfkb1)
04621 NOD-like receptor signaling pathway
105912617 (nfkb1)
04622 RIG-I-like receptor signaling pathway
105912617 (nfkb1)
04623 Cytosolic DNA-sensing pathway
105912617 (nfkb1)
04625 C-type lectin receptor signaling pathway
105912617 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
105912617 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
105912617 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
105912617 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105912617 (nfkb1)
Transcription factors [BR:
char03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
105912617 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
105912617
NCBI-ProteinID:
XP_012697059
Ensembl:
ENSCHAG00000005322
UniProt:
A0A6P3WFD8
LinkDB
All DBs
Position
20:complement(6177000..6209320)
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AA seq
982 aa
AA seq
DB search
MAEDASYLHPQFYDAYSLEPSWIDLEPPVNLPNMSYSNSLRIVDGPFVQIAEQPKQRGFR
FRYGCEGPSHGGLPGASSEKNRKTYPQVKICNYQGPARVVVQLVTNSKDPHLHAHSLVGK
QCEKGICIAELPPKDNTMSFPNLGILHVTKKNVTKVLEERMTEAYRMGYNNGVVIHPDID
ACQGEVRLPRELTEHQKSLVATAATHQSKEMDLSVVRLMFTAFLPDSDGGFSRRLDPVVS
EPIYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEGENGLTWEA
FGDFSPTDVHRQFAIVFKTPKYRDLNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDK
EEVQRKRQKTLPNFQDYSGPGGAGGMYRGGGGGGPATGGGPGTGGGGGGGSFYHGYSTFP
NYTSGYTFSAGMGGGGTNIKHGATRPHLEEEDGDNDCDAGGDEDDEGDDDDPASGGEVQP
ASQTEMGITGDTNKAQGASVEEGAEESQAETDRMDLVRLLESRMADLAERHAFALFQYAV
SGDPCSLLALQRPLMTAQDEDGDTGLHLSVIHSQTDSVRSLTQVISALPGEDVVNMRNDL
YQTPLHLAVITQQREAVDALLVAGADASLTDRHGNTALHLAAQQREGDMVAQMLRHHEVA
ELADVPNSMGLCALHLAVLANSLHAVRSLLEVGASAEVQELSSGRTPLHLAVEQQNISLS
GCLLLEGNADADSCTYNGSTPLHIAAGRGSVRLSALLMAAGADPHKENFEPVYFREDEGT
VEQARDDEDDEGFIPGTTPLDMAASSEVREILSGKEYQPDSRPIPVLTQGDMRSLGPEVK
TALCEALEEHQGGWESLAHSLGLGVLTTAFRLSPSPAGTLLDSYEVSGGTVHELLESLRE
VGNCSALSVLQHHRPQPSPSPTEATHIMGLSEDLLGLKLAGPEEGGVCDSGVETSFHRTS
LSLNESLGSRLELPEAAQQAVA
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagacgcttcataccttcatccacagttttatgacgcttatagcttagagccc
agctggatcgacctagaacctcctgtgaacctccctaacatgtcatactccaacagcctg
agaatagttgatggacctttcgttcagattgcagagcaacctaaacaaaggggcttcagg
tttcgctatggctgtgagggcccgtctcacgggggcctcccaggggcctctagtgagaag
aacaggaagacgtaccctcaagtgaagatctgtaattaccagggtccggctcgtgtggtc
gtgcagctggtcaccaactccaaggacccccacctgcacgctcacagcctggtgggcaag
cagtgtgaaaagggcatctgcatcgccgagctgccacccaaagacaacaccatgagtttt
cctaacttgggaatcctgcacgtgaccaagaaaaatgtgaccaaggtcttggaggagcgg
atgacagaggcctaccggatgggctacaacaacggggtggtcatccacccggatatcgac
gcgtgtcagggggaggtgcgcctgccccgcgaactcacagagcaccagaagagcctcgtt
gccacagcagcaacacaccaatctaaggagatggacctgagtgtggtgcgcctcatgttc
accgccttcctgccggacagcgacggggggttctcacgcagactggacccggtggtgtcc
gagcccatctacgacagcaaagcccctaacgcctctaacctgaagatagtgcgtatggac
cgcacagcgggctgtgtgaccggaggggaggaggtctacctcctgtgtgacaaagtccag
aaagatgacattcaggtgcgcttctatgaagagggtgagaatggccttacttgggaggca
ttcggtgacttctcacctactgacgtccacagacagtttgctatcgtcttcaagacccca
aagtaccgagacttgaaccttcagaagccaacctctgtatttgttcagctgaagaggaag
tccgacaacgaaacaagtgaacccaagccattcacctaccacccacagatcatagataag
gaggaggtccagaggaagaggcagaagacgctgcctaatttccaggactacagcggcccg
ggtggagcaggggggatgtaccggggcggcggaggaggaggaccggccacaggagggggc
cccggcacgggaggaggaggaggaggaggttccttttaccacggctactccaccttcccg
aactacacctctggctacacattctccgcaggcatggggggaggtgggacgaacatcaag
catggagccactcgacctcacctggaggaggaggacggcgataacgactgcgatgcaggc
ggtgatgaagatgacgaaggcgatgatgatgaccctgcctcagggggtgaagttcagcct
gctagccagacagaaatgggcatcacaggggacacgaacaaggcgcaaggggcttctgta
gaagagggggcggaggagtcgcaggccgagacggacagaatggacctagtgcgtctgctg
gagtcccgaatggcagacttggccgagaggcacgcgtttgctctgttccagtacgccgtc
tctggagacccgtgctcgttgctggctcttcagcgcccccttatgaccgctcaggacgag
gacggagacactgggcttcatcttagtgtaatccacagtcagacagactcagtcaggagt
ttgactcaagtcatcagtgcccttccaggagaggacgtggtcaacatgaggaatgatctc
taccagacccccttgcatctggcagtgatcacgcagcagagggaagctgtggatgccctc
ctggtggccggggccgacgctagcctcaccgatcgccacggaaacacggccctgcacctg
gctgcccagcagagggaaggggacatggtggcccagatgctgcggcaccacgaggtggca
gagctggcggacgtgcccaactccatgggcctgtgtgctctccacctggctgtgctggcc
aacagcctgcatgcggtgcggtcgctcctggaggttggggccagcgctgaagtgcaggag
ctcagcagtggacgcacgccgcttcacctggccgtggaacagcagaacatctcgctcagc
ggctgcctgctactggagggcaatgctgacgcagactcctgcacttacaacggctccact
cccctccacatcgcagctggccgcggctccgtccgtctcagcgcgctcctaatggccgca
ggcgcagaccctcataaggaaaactttgagccggtctacttcagggaagacgagggtaca
gttgagcaggccagggatgatgaggacgacgaaggcttcatccctggtaccactcccctg
gacatggccgcctcctcagaagtgcgagaaatactgagtgggaaggagtaccagccagat
agtaggccgatccccgtcctgacgcaaggagacatgaggagcctaggccctgaggtgaag
actgctctgtgtgaagctctggaggagcaccagggcggctgggagagcctggctcactcg
ctggggctgggcgtcctcaccaccgcattcagactcagcccctcccccgcgggcactctg
ctggacagttacgaggtgtcagggggcaccgttcacgagctgctggagagcctgagggag
gtgggcaactgcagtgccctgagcgtgctccaacaccaccgcccgcagccttctccttcc
cccacagaggcaacgcacatcatggggctgtctgaggacctgctgggcctgaagctggcc
ggacccgaggagggcggcgtgtgcgacagcggggtggagacctccttccataggaccagc
ctcagcctgaacgagtccctgggcagccgcctggagctgcctgaagccgcccagcaggcc
gtggcctag
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integrated database retrieval system
