Clupea harengus (Atlantic herring): 105912627
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Entry
105912627 CDS
T09045
Symbol
cacna1bb
Name
(RefSeq) probable voltage-dependent N-type calcium channel subunit alpha-1B
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04010
MAPK signaling pathway
char04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
105912627 (cacna1bb)
04020 Calcium signaling pathway
105912627 (cacna1bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105912627 (cacna1bb)
Ion channels [BR:
char04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
105912627 (cacna1bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
105912627
NCBI-ProteinID:
XP_042565276
Ensembl:
ENSCHAG00000009515
UniProt:
A0A8M1KMJ0
LinkDB
All DBs
Position
12:complement(18209311..18354096)
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AA seq
2394 aa
AA seq
DB search
MTRFGDDLPTRYGGGGPPGAGRGGARAGGPPGGQRVYKQSMAQRARTMALYNPKQTKQNC
FTVNRSLFIFSEDNIIRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPAADKTPMSE
RLDDTEPYFIGIFCFEAGIKIIALGFLFHKDSYLRNGWNVMDFVVVLTGILAKVGSDFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAIVMFAIIGVEFYMGK
FHTTCFKEDTGERAADHPCGTESPSRLCENGTRCQEYWIGPSYGITNFDNILFAILTVFQ
CITMEGWTDILYNANDSSGNTWNWLYFVPLIIIGSFFMLNLVLGVLSGEFAKERERVEKR
QEFLKLRRQQQIERELTGYLEWICKAEEVLLAEEDQNAVEKSALDGAWYKRKQNNPVLKR
GKVRKSKNDLIHAEEGEDQFTDISSVAPPGSPFARASLKSSKNDSSSYFRRKEKRMRFFI
RRMVKAQSFYWFVLCVVGLNTLCVAIVHYDQPEWLTKALYLAEFVFLGLFLTEMMLKMYG
LGARNYFHSSFNCFDFGVILGSILEVVFAAIHPGASFGISVLRALRLLRIFKVTKYWNSL
RNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDNFPSAIMT
VFQILTGEDWNAVMYHGIESQGGVHGGMFSSVYFIILTLFGNYTLLNVFLAIAVDNLANA
QELTKDEEQQEEEANKKLALQKAMEVKEVSPMSAANISITAFVKQNRGAISRSSSICSAH
SPKEQRSLKMSVWEQRTTQLRRHHLRASSEALYNELEPEDRRRLSSALQLRPDMKTHHDR
PLLVEQGNGTNGEGNGNGTEKPPRPAAEGEAQDDLSQSQQAAHPHKHHRHRDRSAHENGE
AQGEGRTGSRHHTHHSRSRERREGRLEHSHSQDGGPNSGHRHHHQGAGSPEEDGGERARV
GDRDREHRHHHSHRQSRGEGNGGLSNGGRGGERRSRAHRDGEREANGERRRHQQRVLRAQ
STLEGEEGRENGDSERTKAHRDRYSDTDADGSATSPLQSPSELLPVVEKPEDADNLKNNS
RSGQTGIHIPVTITAPPGETTIIPMNNLDGDSLLLNEEKKELEDEEDEEAQDGPKQILPY
SSMFVFGQTNPVRRLCHYVVNLRYFEMCILLVITMSSIALAAEDPVQPDAPRNQVLKYLD
YVFTGVFTFEMVIKMIDLGLLLHPGSYFRDLWNILDFIVVSGALVAFAFSRGKGKDINTI
KSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYILFMFIFAVIAVQLFKGK
FFYCTDESKTLEKDCRGKFLEYNDRDKVEAKDREWRKYDFHYDNVLWAFLTLFTVSTGEG
WPLVLKHSVDATDEDLGPSPGFRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKA
MSDCSLEKNERACIDFAIHAKPLTRYMPQNKQSYQYKLWKFVVSSPFEYSIMTLIALNTI
VLMMKFHDAPKPYEDMLKYLNIIFTALFTLECIIKMVAFGPLNYLKEAWNVFDLITVVGS
ITDILVTEIKDKLINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAM
LFFIYAIIGMQVFGNIQLNDDTAINRHNNFQTFFQALILLFRSATGEAWHEIMQHCLSER
ECDPAAGNARRECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDASILGPHHL
DEFIRVWAEYDPAACGRMNYLDMYEMLRHMSPPLGLGKKCPPRIAYKRLVRMNMPIAEDN
TVHFTSTLMALIRTALDVKLASGVLAQRLCDADLKREIHRVWPSLPAKTVELLVTPPKLN
ELTVGKVYAALMIFDYYKQNRAKKLQLQQQQQQPGVGVGLGVGVPGKVGALFRPMLPLTQ
IQEPPVTPDKAPPAAQPDSLPQPEPPPTTSLTSVEAAQTQSSAMKKSPSGEAPQEGQQRS
RQSVQRGQSDDTQTSSKTQESGAELSDLEYTSDMERFSILEGPGRASSMPRLNNAEYQQR
SHPRHTTGPYLPPILDVSPLTMRRSASTLNPQRPQEVNLREYGLQRSSQAQGQGQDRAHH
HHHHHHHCHKRRERDKKHNSLERDSTEQTTTTRGSAAEVAGEHMSRERDRDRGRSHERKH
HSASGEPKTRYYSCERYGNREQGHAHSAGPSRSTSPGEQHETLRLKQAGITARGSPVILA
SSGNTPSRSRRQLPQTPLTPRPAVAYKTANSSPVGMPPPASARPAPGSSRLTRGLSEHNS
LLADSASPSPVPVTRIGSVPSLAAESRHLLPEETDDFQDALSTHHHAMGRSVRTLPSAGH
AGSGTRTGSSSALPQSGRGGVPNGYHFTLGVSSASGSGARGTGGYQETEKEDWC
NT seq
7185 nt
NT seq
+upstream
nt +downstream
nt
atgactcgctttggagatgatctaccaacccgctatggaggcggaggtccgccgggcgct
ggaagagggggcgcccgagcgggaggtcccccaggcggccagagggtgtacaagcagtcg
atggctcaaagagccaggacaatggctttgtacaacccaaaacagacaaaacagaattgc
ttcactgtcaatcggtccttgtttatttttagcgaggacaatatcataaggaagtatgct
aagagaattaccgaatggcctccatttgagtacatgatcctcgccaccatcatcgccaac
tgtatagtgctggccctggagcagcacctaccagcagcagacaagacccccatgtccgag
cgcctggacgacacagagccctacttcattggaatattctgttttgaggcaggcattaag
atcatcgccttgggcttcctctttcacaaagactcctacctccgcaatggctggaacgta
atggactttgtggttgtcctcactgggattttggccaaagtagggtcagacttcgacttg
aggaccctgcgagctgtgagagtgttgagacccttgaagctggtatcgggtatccccagc
ttgcaagtggtcttaaagtcgatcatgaaggccatggttcctctgctgcagatcggcctg
ttgctcttctttgccattgtcatgtttgccatcatcggtgtggagttctacatgggcaag
ttccacaccacctgcttcaaggaagacacaggtgagcgggcagcggatcacccctgtggc
actgagtcgccctcccggctgtgtgaaaacggcacccgatgccaagagtactggatcggc
cccagctacggcatcaccaacttcgacaacatcctgtttgccatcctcaccgtcttccag
tgcatcaccatggagggctggacggacatcctgtacaacgccaacgattcctcggggaac
acctggaactggctttacttcgtcccgctcatcatcatcggctcctttttcatgctcaac
ctggtgctgggtgtgctgtcaggggagtttgccaaagagagggagcgcgtggagaagcgg
caggagttcctgaagctgcggcggcagcagcagattgagcgggagctgacgggttacctg
gagtggatctgcaaagccgaggaggtgctgttggctgaagaggaccagaatgcggtggag
aagtctgctctggatggtgcgtggtacaagaggaaacagaacaacccagtgttaaaacgt
ggcaaagtgaggaagagcaagaatgacctgatccatgcggaggagggagaagatcaattt
acagacatctcctccgtcgcccctccgggttctccgtttgcgagagccagcctgaagagc
agtaagaacgacagctcctcctacttccgccgcaaggagaaacgcatgcgcttcttcatc
cgccgcatggtgaaggcccagagcttctactggttcgtgctgtgtgtggtgggcctcaac
acgctgtgtgtggccatcgtgcactacgaccagcccgagtggctcaccaaagcactctat
ctggcagaatttgtgttcctgggtctgttcctgacagagatgatgctgaagatgtatggc
cttggtgccaggaactacttccactcctcattcaactgctttgactttggggtgattctg
ggcagcatactggaggtggtttttgcagccatccatccgggagcttcatttggcatcagt
gttctcagggccctgcgcttactgaggatcttcaaagtcacaaagtactggaactccctg
aggaaccttgttgtgtctctgctcaactccatgaagtccatcatcagtttactcttcctc
ctcttcctcttcatcgtcgtcttcgctctgctgggcatgcagctcttcggtggccagttt
aactttgaagatgaaacaccaactacaaactttgacaactttccctctgctatcatgaca
gtcttccagattctgacaggagaggactggaatgcagtgatgtatcatgggattgaatcc
caggggggcgtccacggcggaatgttctcctctgtctactttatcatcctcactcttttt
ggaaactacactctgctaaatgtattcttggccattgcggttgacaacctcgctaatgcg
caggaactcacaaaggacgaggaacagcaggaagaagaagccaataaaaagctggccctt
cagaaggccatggaggtgaaggaggtcagccccatgtcagcggccaacatctccatcaca
gcttttgtaaagcaaaatcgaggggcgatctctcgcagctcctccatctgcagcgctcat
tcacccaaggagcagcgctcgctgaagatgtcagtgtgggagcagcgcaccacgcagctg
cggcgccaccacctgcgggcgagtagcgaggcgctctacaacgagctggagcccgaggac
cgccgccgcctctcctccgccctccagctgcggcccgacatgaagacgcaccatgaccgc
cccctgctggtcgagcagggcaacggcacaaacggggaaggcaacggtaacgggactgag
aaaccgccgaggccggcagcggagggagaggcgcaggacgacctgtcgcagtcgcagcag
gcggcgcacccgcacaagcaccaccgccacagggaccgctccgcccacgagaacggcgag
gcccagggggagggccggacgggcagcaggcaccacacccaccacagccgcagccgggag
cggcgcgaggggaggctggagcacagccacagccaggacgggggccctaacagtgggcac
aggcaccaccaccagggggccggatctccggaggaggatgggggtgagagggcgagggtc
ggggacagagacagggagcacaggcaccaccactcccacaggcagtcaaggggcgagggc
aatgggggcctgtccaacggaggtcgggggggggagaggcgcagccgggcccacagagac
ggggagagggaggccaacggggagcggaggaggcatcagcagcgggtgctgagagcccag
tccacactggagggagaggagggcagggagaatggagacagtgagcggaccaaggcacac
agggacagatactccgacacagacgctgacggatcggccaccagccccttgcagtctccc
tcagagctgctgccggtcgtggagaagcctgaagatgccgacaacctgaagaacaacagc
cgcagtggccaaacaggcatccacatccctgtgaccatcacagcccctcctggcgaaacc
accatcattcccatgaataacctggatggggatagcctccttctgaacgaggagaagaaa
gagctggaggacgaggaggacgaggaggcgcaggatgggcctaagcagatcctcccctac
agctccatgtttgtgttcggacagaccaacccggtgaggcggctgtgccactacgtggtg
aacctgcgctactttgagatgtgcatcctgctggtcatcactatgagcagcatcgctctg
gctgctgaagatcccgttcagcctgacgcgccgcggaaccaagttttgaaatacttagat
tacgtcttcactggcgtgttcacttttgagatggtgatcaagatgattgacctagggctc
ttgcttcaccccggctcgtacttccgtgacctctggaacattctagacttcatcgtggtc
agtggcgctctggtggccttcgccttctccagagggaaagggaaggacattaacaccatc
aagtccctgagagttctgcgtgtgctgcgaccactgaagaccattaaacgtttgcccaaa
ctcaaggctgtgtttgactgcgtggtcaactctctgaaaaacgtgctgaacatccttata
gtctacatcctcttcatgttcatcttcgccgtcatcgctgtgcagctcttcaagggcaag
ttcttctactgcactgatgagtccaagaccctggagaaggactgcaggggcaagtttctg
gaatataacgaccgggacaaggtggaagccaaggaccgggagtggaggaagtacgacttt
cactatgacaacgttctctgggccttcctcacgctcttcaccgtgtccactggagaggga
tggccattggtcctgaagcactcagtagatgccacagatgaggacctgggccccagtccc
ggcttccgaatggagatgtccatcttctatgtggtctacttcgtggtgttccccttcttc
tttgtcaacatcttcgtggctttgatcatcatcaccttccaggagcaaggagacaaggcc
atgtccgactgtagtctggagaagaatgagcgggcgtgtatagactttgccatccacgct
aaaccgctaacgcgctacatgccccagaataagcagtcgtaccagtacaagctgtggaag
tttgtggtgtccagccctttcgagtactccatcatgaccctgatcgccctaaacaccatt
gtgctgatgatgaagttccatgatgccccgaagccgtacgaggacatgctgaagtacctg
aacatcatcttcactgcactcttcactcttgagtgcatcatcaagatggtcgccttcggg
ccactgaattacctgaaagaggcctggaatgtgtttgacttgatcacagtggtgggcagc
atcacagacatactggtgactgagatcaaggacaagctgatcaacctgagtttcctgagg
ctcttcagggcggcccgcctcatcaagctgctccggcagggctacaccatccgcatcctg
ctctggaccttcgtgcagtccttcaaggcactgccatatgtctgcctcctcatcgccatg
ctgttcttcatctacgccatcatcgggatgcaggtgtttggaaacatccagctaaatgat
gacacagcaatcaaccgccacaacaatttccagaccttcttccaggccctgatacttctg
ttcaggagtgccacgggggaagcgtggcatgagatcatgcagcactgcctgagcgagcga
gagtgtgaccccgccgccggcaacgcgaggagggagtgcggcagcgactttgcctacttc
tacttcgtctccttcatcttcctctgctccttcctgatgctcaatctgtttgtggccgtc
atcatggacaactttgagtacctgacgcgagatgcctccatcctgggtcctcaccacctg
gacgagttcatccgtgtctgggccgagtacgacccggcagcctgtggccgcatgaactac
ctcgatatgtatgagatgctccgccacatgtccccaccgctggggttgggaaagaaatgt
ccgccacgaattgcctacaagcgcctggtcaggatgaacatgcccattgctgaggacaac
acagtgcacttcacctccaccctcatggcactgatccgcactgccctggatgtcaaactg
gcctcaggtgttctggctcagcggctgtgcgacgctgacctgaagagagagatccaccga
gtgtggcccagtctgcccgccaagaccgtcgaactgctggtgaccccgcccaaactgaat
gagctgacggtggggaaggtgtacgccgcgctgatgatctttgactactacaagcagaac
cgtgccaagaagctccagctgcagcagcagcagcaacagcccggcgtgggagtgggattg
ggagtgggagtgccggggaaggtgggggccttgttccgccccatgctgcccctgacacag
attcaggagccgcccgtcacccctgacaaagccccgcccgcagcgcagcctgattcgctg
cctcagccggagccgccgcccactacctccttgaccagtgtagaggcagcccaaacccag
agcagtgccatgaagaagtctccctcaggggaggcacctcaggaagggcagcagagaagc
aggcagtcggtacagaggggccaatcagacgacacgcagacctcaagcaaaactcaggaa
tcaggagcggagctgagtgatttggagtacacttcagacatggagcgattctccatcctg
gaggggcctggccgagcctcctccatgcccaggctcaacaatgctgagtaccagcaacgg
agccaccctcgccacaccactggaccttacctgccacccattctggacgtgagccccttg
accatgaggcgctcggcatccacgctgaacccacagcgcccccaggaggtgaacctgagg
gagtacgggctccagaggtcctcgcaggcccaggggcagggccaagacagggcccaccac
catcaccaccaccaccaccactgccacaagcgcagagagcgggacaagaagcacaactcg
ctggagagggacagcacggagcagacgaccactacacggggttcggcggcagaggtggcg
ggcgagcacatgagtcgtgagcgggatcgggatcgaggccgctcgcacgagcggaagcac
cactcggcgtcgggcgagcccaagacacgctactactcgtgcgagcgctacggcaaccga
gagcagggccacgcccactcagctggaccaagccgatccacctcccctggggaacaacat
gagaccttacgcctgaaacaggctggcatcactgccaggggcagcccagtgatcctggca
tcgagtggcaacacccccagccgcagccgccgccagctccctcagactcccctcaccccg
cgcccagccgtcgcttacaaaaccgccaactcgtcccccgtcggcatgccgccgcctgcc
agcgcccgtcctgcccccggctccagccgcctgacccgcggcctctcggagcacaactcc
ctgctcgccgacagcgccagcccctccccagtgcctgtcacccgcattggctccgtgccc
agcctggccgcagagtcgcgccacctgcttcccgaggagacggacgacttccaggatgcg
ctgagcacccaccaccacgccatgggccgctcggtgcggacgctgcccagtgccggtcac
gccgggtccgggaccagaacaggctcctcgtcggccctgccccagtcgggccgcggtggg
gtgcccaacgggtaccacttcaccctgggcgtgagctcggcctccggctccggagccaga
ggcactggcggctaccaagagactgagaaagaggactggtgctag
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integrated database retrieval system
