Clupea harengus (Atlantic herring): 105912664
Help
Entry
105912664 CDS
T09045
Symbol
xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5 isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
105912664 (xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
char03400
]
105912664 (xrcc5)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
105912664 (xrcc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
VWA
Motif
Other DBs
NCBI-GeneID:
105912664
NCBI-ProteinID:
XP_012697101
Ensembl:
ENSCHAG00000026084
UniProt:
A0A6P3WEX9
LinkDB
All DBs
Position
2:9046538..9062483
Genome browser
AA seq
726 aa
AA seq
DB search
MARTSKSALVLCMDVGFSMSNAAPGHEAPFEQAKKVIQKFVQRQVFAETKDELGLVLFGS
DNTKNPLATDGQYQNIAVHRHLMIPDFELLEEIQNDIHPGSQQADWLDALVVCMDLLQKE
TLGKKCDRLNIALLTDLNTQVCADQLDVIISNLKRAGITLQFFLPFPADADDPGEGGSDG
DGGARRHPHGKGLSREQQKGLEMVQQIMHSVDEESGMEEVHAFSDAIEKLSIFKHIERRP
MAWPCILTIGTSLSIRIVGYKAVTEEKVKKTWSVVDAQSNRRDDVKRDTVYCLHDDNETE
VQREDTIQGFRYGSDIVPFSKVDQEQMKYKSDGKSFSVLGFTKQSLINRHHFMGSQAIKV
FAARDDEHAAVALSALIRALDSTDMVAIVRYAYDRRSNPQVGAAFPCVKEKYECLIYVQL
PYMEDLRQFAFASLENNKKFSPTEDQLSAVDSLIDSMMLVEEKEDREKEDLFKVNHIPNP
QFQRLFQCLHERAVHPGAPLPPMEPWLKRVLEKPQALEARCHAPLEEVKKKFPLKVVVRK
KEQKTSADVFGNGKEEPDAKKAKGDEEEDYNLAEISEGNITSVGSVDPVKDFRALIRHKT
LPFGEVCQQLTLRIEQLLGNKSTPYYMKAITCILAFRDQSVKAATAELFNSYMQSLKRSI
PDRSLQEFWDLVSSDGLTLISKDEVEGSSVSKQEANQFLLLEEKMEEVETPAVVDTGDVD
DLLDMM
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgaacaagcaagtcagcgctggtgctgtgtatggatgttgggttctccatgagc
aacgcagcccctggccatgaagcaccgtttgagcaagccaagaaagtcatacagaaattt
gttcaacgacaggtgtttgcagaaacgaaggatgagctgggccttgttctctttgggtca
gacaacactaaaaacccgctggccactgatggccagtaccagaacatcgccgtccatcga
cacctcatgatcccagactttgagctgctggaggagatccaaaatgacatacatccaggt
tctcaacaggcagattggttggatgcacttgtggtgtgtatggacctcctgcaaaaggaa
actctggggaagaagtgcgacaggttaaacattgccctgctcactgacctaaacacgcag
gtgtgtgctgatcagctggacgtcatcatcagcaacctgaagagggctggaatcacacta
cagttcttcctgccgttccctgcggacgcggatgatcctggagagggggggtcggatgga
gacggaggtgcccggcggcacccccacgggaaggggctctcgcgggagcagcagaagggg
ctggaaatggtgcagcagatcatgcactccgtggacgaggagagcggcatggaggaggtg
catgccttcagtgatgccattgagaagctgtccatcttcaagcacattgagaggagaccc
atggcctggccatgcatactcaccataggcacctccctgtccatccgcatcgtgggctac
aaggctgtcacagaggaaaaggtaaaaaagacgtggtccgtggtggacgcccagtccaac
aggcgagacgacgttaagagggacactgtctactgtctccatgacgacaacgagacagag
gtgcagagggaggataccatccagggtttccgatatgggagcgacattgttcctttctcc
aaggtggaccaggaacagatgaagtacaagtcggatggaaagtccttctctgttctcggc
ttcaccaaacagagcctgattaatcgccatcatttcatgggcagtcaggccatcaaggtc
ttcgcggccagggatgatgagcatgctgctgtcgccctgtcggccctgatccgcgcgctg
gacagcacggacatggtggccatcgtcaggtacgcctacgatcgccgtagcaacccccag
gtgggcgctgccttcccctgcgtcaaggagaagtacgagtgcctgatctacgtccagttg
ccctacatggaggatctgaggcagttcgccttcgcctcgctggagaacaacaagaagttt
tcacccacggaggatcagctgtcagcggtggactccctcattgactccatgatgctggtg
gaggagaaggaggacagagagaaggaggacctgtttaaagtcaaccacattcccaaccca
cagttccagagactcttccagtgtttgcacgagcgggcggtgcacccgggcgccccgctg
ccccccatggagccgtggctgaagcgagtcctggagaaaccccaggctctggaggcccgc
tgccatgccccgctggaggaggtgaagaagaagttccctctgaaggtggtggtgcgcaag
aaggagcagaagaccagtgcagacgtgttcgggaacgggaaagaggagccagatgctaag
aaggccaaaggggacgaggaggaagactacaatctggccgagatttcagagggcaacatc
acatctgtgggaagtgtggatccggtgaaagacttccgtgcacttattcgacacaagaca
cttcccttcggcgaggtctgccagcagctgaccctcagaatagagcagttgctgggcaac
aagagcacaccctactacatgaaggccatcacctgcatcctggccttcagggatcagtcc
gtcaaggctgcgacggctgaactcttcaacagctacatgcagtccctgaagagaagtatt
ccagacagaagcctccaggaattctgggatttagtctcctcagatggcctgactttgatc
agcaaagatgaagtggagggaagctctgtgtccaagcaggaggccaatcagttcctcctg
ttggaggagaagatggaggaggtggagactccagcggtggttgacacaggagacgtagat
gatctgctggacatgatgtga
DBGET
integrated database retrieval system
