Clupea harengus (Atlantic herring): 105912686
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Entry
105912686 CDS
T09045
Symbol
hoxc1a
Name
(RefSeq) homeobox protein Hox-C1a
KO
K09301
homeobox protein HoxA/B/D1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105912686 (hoxc1a)
Transcription factors [BR:
char03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ANTP: HOXL
105912686 (hoxc1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
Homeobox_KN
DUF7255
SPMIP8
Motif
Other DBs
NCBI-GeneID:
105912686
NCBI-ProteinID:
XP_012697125
Ensembl:
ENSCHAG00000026842
UniProt:
A0A6P3WF92
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All DBs
Position
4:complement(3872090..3876708)
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AA seq
331 aa
AA seq
DB search
MSLSRVKPRSIIAGSTVPVRPGSECNYNKGECRRNPIMNSLEELIHSGANGSESTGHRLT
ESKLEDLNTRTNPQVSGGGEGLVEVERECSQYCYSTFSGDTSDVFNLFQNDGLSVTSIRP
QHPRLPSSPFGAQTQALDAGYSHSTDTSRTFTEAFTEPGPLNACIEMYKNNGPRFHLAVK
GNHTFQNIVEKMPDSSYGGKTFEWMKVKRSQPRMAKMQMPCGENYFATEHRMSSGCDQSE
DIIHGQPTANGVPRTNFSTKQLTELEKEFHFNKYLTRARRVEIANSLQLSETQVKIWFQN
RRMKQKKLQREGIVPGPGHASAPERTALQTR
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgtccttatccagggttaagccacgatccataatcgctgggtctacggtgcccgtgagg
ccaggctctgagtgcaactacaataaaggagaatgtagaagaaacccgattatgaattct
ttagaagaattaattcacagcggagcaaatggctcggaaagtacaggccaccgtttgacg
gagagtaaacttgaagatttgaacacaaggactaacccacaggttagcggaggcggcgag
ggacttgtggaagttgagcgagaatgctcacagtattgttactcaactttctccggcgac
accagtgatgtgttcaacctctttcaaaatgacggcttgtctgtgacatctatccgtcct
cagcatccgcgtctcccctcgtcccccttcggtgctcagacgcaggcgctcgatgccggt
tactcgcactccacagacacttcaaggactttcaccgaggcatttaccgagccggggcca
cttaacgcctgcattgaaatgtacaagaacaacgggccaagatttcacctcgctgttaag
ggcaaccacacttttcaaaatatcgttgaaaagatgccagattccagttatggcggtaaa
acatttgagtggatgaaggttaagagaagccaaccccggatggctaaaatgcagatgcct
tgtggtgaaaattattttgcaacggaacaccgaatgtccagcggttgtgaccaaagcgag
gacatcatacacggccagccgactgccaacggagtgccgcggactaacttcagcaccaaa
cagctgaccgagctggaaaaagagtttcacttcaacaaatatctgacgcgggcccggcgg
gtggagatcgccaacagcctccagctgagtgagactcaggtgaaaatttggtttcagaac
agacgcatgaagcagaagaaactgcagcgagagggcatcgtccccggaccaggacacgcg
tctgctccagaaaggacagctctccaaacacgttag
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