Clupea harengus (Atlantic herring): 105912952
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Entry
105912952 CDS
T09045
Symbol
trmt13
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog isoform X1
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
char03016
]
105912952 (trmt13)
Enzymes [BR:
char01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
105912952 (trmt13)
Transfer RNA biogenesis [BR:
char03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
105912952 (trmt13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Methyltransf_32
OrgC
Motif
Other DBs
NCBI-GeneID:
105912952
NCBI-ProteinID:
XP_012697416
Ensembl:
ENSCHAG00000024437
UniProt:
A0A6P3WF94
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Position
10:17369154..17373316
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AA seq
455 aa
AA seq
DB search
MESVVVVADGVSAPLPGRCAYFVEKKKRYCKMVVGAGKAYCGEHANADQESDRQRIPCPL
DPKHTVYADILAKHLKKCNSKEKPKPVYYVKDINAGPVCDKETVSDETPLSARSKQEMEH
LIQKLKYAVKGLSGTHKDSMLSHPVLHEPLHDPNNGDSACKHLKQQASILGNMEALHLLG
SHRCVVEFGAGKGKLSHWIHSALETAEDVHFLLVERSTTRFKVDGKNRSKDSTFERLQVD
IQHLDLSKVSLLQEQRLPVVGVGKHLCGAATDLALRCLLERAEPVGHGDQLPSKRVKADT
LEVCGVAVALCCHHRCDWRHYVGREFFQERGLGAAEFGAFQRMSSWATCGMSKAAGHRDA
AAAGTTGTTGRDAADEEDEHEDVGDAVPEGLDSSVGVEEREHIGRLCKLLIDQGRVHYLR
QRGLDADLCFYTSPDISLENVLLTAVPHTGVPQSL
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggagtctgttgtggtggtggcagatggcgtgtctgcccctctcccaggcagatgtgcc
tatttcgtggagaaaaagaaaagatactgtaaaatggttgttggagctggtaaagcatat
tgtggtgaacatgccaatgccgatcaagaaagcgacagacagcgaataccatgcccgctg
gaccccaaacacacagtctatgccgacattttggcaaagcacttgaagaagtgcaactca
aaggagaaacccaaacctgtttattatgttaaagacattaacgctggtccagtctgcgac
aaagaaactgtttcagatgagacgccactgtctgctcgctctaaacaagagatggagcat
cttattcagaagcttaaatatgctgtgaaaggactcagtgggacacacaaggacagcatg
ctgtcccatcctgttcttcatgagcctctgcatgacccaaataatggagactcagcctgc
aaacacctgaagcagcaggcttctattctgggaaacatggaggctttgcacctgcttgga
tcacaccgatgcgtggttgagtttggagctgggaaagggaagctttcgcactggatacac
tcggccctggagaccgcagaagacgtccacttccttctggtggagagatccaccactcgc
tttaaggtagatggcaaaaacagaagcaaagactccacttttgaaaggctgcaggtggac
attcagcaccttgacttgagtaaagtctccctccttcaggagcagcgcctccctgtggtg
ggtgtggggaaacacttgtgtggggccgcaacagacctggctctgcggtgtctgctcgag
agagctgagccggttggccatggcgaccagctgcccagtaagcgtgtgaaagcggacacc
ctggaagtgtgcggggtggccgtcgccctgtgctgccaccaccgctgcgactggaggcac
tacgtggggagagagttcttccaggagcgcggcctgggcgctgccgagttcggagccttc
cagcgcatgtccagctgggccacctgtggcatgagcaaagccgccgggcacagagacgct
gccgcagcgggcaccacgggcaccacaggccgcgacgcagcagacgaggaggacgagcac
gaggacgtgggggatgccgtaccagagggtctggacagcagtgtgggtgtggaggaacgg
gagcacattgggcgtctgtgtaagctgctgatagaccagggcagggtgcactacctcaga
cagaggggcctggatgctgacctgtgcttctacaccagccctgacatctccctggagaac
gtgctgctcaccgccgtgccccacacgggggtgccacagtcactatag
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