KEGG   Clupea harengus (Atlantic herring): 105913099
Entry
105913099         CDS       T09045                                 
Symbol
cul4b
Name
(RefSeq) LOW QUALITY PROTEIN: cullin-4B
  KO
K10609  cullin 4
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03420  Nucleotide excision repair
char04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    105913099 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    105913099 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:char04121]
    105913099 (cul4b)
   03400 DNA repair and recombination proteins [BR:char03400]
    105913099 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:char04147]
    105913099 (cul4b)
Ubiquitin system [BR:char04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     105913099 (cul4b)
DNA repair and recombination proteins [BR:char03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      105913099 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      105913099 (cul4b)
Exosome [BR:char04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   105913099 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_AB Cullin_Nedd8 SecA_SW
Other DBs
NCBI-GeneID: 105913099
NCBI-ProteinID: XP_031443406
Ensembl: ENSCHAG00000019014
UniProt: A0A6P8GZD6
LinkDB
Position
20:complement(26095781..26107581)
AA seq 855 aa
MNDGLPSPNPPPPTQEARPAASDVNSDSSLTSSKKRKINSSEKEDIDSISSSPKAICNSS
SSCSSTSQHIQKKLRFEDPAEIIGLDVKMAEESSPTASCSSKTKNVFLAGGVGHHANGLT
KSTGSTTFSNSKPGAAKKLVIKNFKEKPKLPENYTQETWQKLKEAVEAIQNSTSIKYNLE
ELYQAVENLCSHKISSKLYKQLRAVCEDHIKAQIDQFREDALDSVLFLKKIDKCWQDHCR
QMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFHIISDLKVQSKTISGILLLIERER
SGETVDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAXRGQRLMQEREVPEYLHHVN
KRLEEEADRVITYLDQSTQKPLIASVEKQLLGEHLTAILQKGLNLLLDENRIQDLSLLYQ
LFSRVRGGVQALLHHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDYIIDVCFMKNE
KFVNAMKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIY
GKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDI
MVQFKQYMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPAEMVKLQEIFKTFYLGKHSG
RKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEDIKLATGIEDSEL
RRTLQSLACGKARVLTKLPKSKDVEDGDKFSCNDDFRHKLFRIKINQIQMKETVEEQAST
TERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDY
MERDKENPNQYNYVA
NT seq 2568 nt   +upstreamnt  +downstreamnt
atgaatgatggtttaccttcccctaatcccccaccgccaacccaagaggctagaccggca
gcttctgatgttaatagcgatagtagccttacgtcttctaagaagagaaaaataaatagc
tctgagaaagaagacatcgattcaatatcttcatctccaaaagccatttgcaattcttct
tcgtcctgttcttccacctcccagcatattcaaaagaagttaaggttcgaagatccagct
gaaatcattggactggatgtgaaaatggctgaagagtcttcaccgactgcatcgtgttct
agtaaaactaaaaatgtgtttttggctggaggtgttgggcatcacgcaaacggattgacc
aaatccaccggatccaccaccttttctaacagtaaaccgggagccgcaaagaaactagtc
atcaagaacttcaaagaaaagcccaaattaccagagaactacacacaggaaacctggcaa
aagttgaaggaggcagtggaggccattcagaacagcacttcgataaagtacaatctggaa
gagctctaccaggcagttgaaaatctttgctcccataaaatatcttccaagctctacaaa
cagcttagggctgtgtgtgaagatcacatcaaagcgcagattgaccaattcagagaggat
gcactggacagtgttcttttcctgaagaagattgataaatgttggcaggatcattgcaga
caaatgatcatgattagaagtatatttttgtttttggaccgcacgtacgttttacaaaat
tcaatgctgccatcaatctgggacatgggcttggagcttttccggttccacatcatcagc
gatctgaaggtgcagagcaagactatctctgggatcttgctgctgattgagagagagcgg
agcggcgagacggtggaccgcagtctgctccggagcctcctcagcatgctctcagatctg
cagatttaccaggactcgtttgagcagcgctttttggaggagacaaatcgcctttatgcc
nacagaggacagaggctgatgcaggagagagaggttcctgaataccttcatcatgtcaac
aagcgtttggaagaggaggcagacagggtcattacctatctggaccagagcacacaaaaa
ccgctgattgcctccgtggagaaacagctcctgggggagcatctgactgccatcctacag
aaaggtttgaatctcttgctggatgagaaccggatccaggacctgtccctactctaccag
ctcttcagtcgtgtacgaggcggcgtccaggctcttcttcatcactggattgagtacatc
aaggcctttggaagcacaattgttatcaaccctgagaaagacaagaccatggtccaggag
ctgctggacttcaaagacaaggtggactacatcattgatgtgtgtttcatgaaaaatgag
aagtttgtgaacgcaatgaaagaggcctttgagaccttcatcaacaaaaggccaaacaaa
cctgctgagctcatagccaagtatgttgactccaaactgagggcgggtaacaaggaggcc
actgacgaagagctggagaaaatgctggacaaaatcatgatcatcttcaggtttatctat
ggcaaagatgtttttgaggccttttacaagaaggacctggccaagaggctcctggtaggg
aagagtgcctctgtggacgcagagaagtccatgctgtcaaaactcaaacatgaatgtggg
gcagccttcaccagcaaactagaagggatgttcaaggacatggaactatcaaaggatatt
atggtgcagttcaaacagtatatgcagtgtcagaacatccctggaaacattgagctgacg
gtgaacatcctcaccatgggttactggcccacctacgtccccatggaggtccacctgccc
gcagagatggtgaagctgcaggagatcttcaaaaccttctacctgggcaagcacagcggc
aggaagctgcagtggcagtccacattaggccactgtgtgctgaaggcggagttcaaggag
ggcaagaaggagctgcaggtgtctctgtttcagacactcgtgctgctcatgttcaacgag
ggagaggagttttccttggaggacattaaactggcaacaggaattgaggacagtgagctc
aggcggaccctgcagtccctggcgtgtgggaaggcccgtgtgctcaccaaactccccaag
agcaaagatgtggaagatggtgacaaattctcctgcaatgacgacttcagacacaagctc
ttcaggatcaagatcaaccagatccaaatgaaagagacggtggaggagcaagccagcact
acagagagggtcttccaagacaggcagtaccaaattgacgcagccatcgttcgcatcatg
aagatgaggaagaccctgagccacaaccttttggtgtcggaggtctataatcaactcaag
ttcccagtgaagcctgctgatttaaagaagagaatagaatcgctcatcgacagggactac
atggaacgagacaaggagaatcccaatcagtacaactacgtcgcctag

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