Clupea harengus (Atlantic herring): 105913170
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Entry
105913170 CDS
T09045
Symbol
sox2
Name
(RefSeq) transcription factor Sox-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105913170 (sox2)
Transcription factors [BR:
char03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
105913170 (sox2)
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
105913170
NCBI-ProteinID:
XP_012697650
UniProt:
A0A6P3WFZ4
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Position
10:complement(4509180..4512012)
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AA seq
311 aa
AA seq
DB search
MYNMMETELKPPAPQSTGGTGNTNTSGNNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDK
YTLPGGLLAPGGNGMGAGVGVGGGLGGGVNQRMDSYAHMNGWTNGGYGMMQEQLGYGQHP
GLNAHNTAQMQPMHRYDMSALQYNSMTGSQTYMNGSPTYSMSYSQQTTPGMTLGSMVKSE
SSSSPPVVTSSSHSRGAPCQTGDLRDMISMYLPGAEVPEQTAQSRLHMSQHYQSAPVPGT
TINGTLPLSHM
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgtataatatgatggaaaccgaactcaaaccccctgcaccccaatcaactgggggtacg
gggaatactaacacttctggaaacaaccagaaaaacagcccggaccgagtcaagagaccc
atgaatgccttcatggtgtggtccaggggacagcgaagaaaaatggcgcaggagaacccc
aaaatgcacaattcggaaataagcaaaagactcggggccgaatggaaacttctttccgag
agtgaaaagcgaccttttattgacgaagccaagcgtctccgtgctctccacatgaaggaa
catccggattataaatacagaccccggcggaaaaccaagaccctgatgaagaaggacaag
tacactcttccaggtgggcttcttgcaccgggcggcaatggcatgggcgctggggtgggt
gtcgggggtggcctgggcggcggggttaaccagaggatggacagttatgcacatatgaac
ggatggacaaacggaggctatggtatgatgcaggaacagcttggctacgggcagcacccc
ggtctaaacgcgcacaacacagcacaaatgcagcccatgcaccgttatgatatgagcgcg
ctccagtacaattctatgacaggttctcagacatacatgaacgggtcgcccacgtatagc
atgtcctattcgcagcagaccacccctggaatgactctcggctcgatggtcaagtccgag
tccagttcgagtccaccggttgtcacctcttcctcacactcaaggggtgccccttgccaa
actggggacttacgggacatgattagtatgtacttaccgggcgctgaagttcctgagcaa
actgctcaaagcagacttcacatgtcccaacattatcagagcgcacctgtgcccggcaca
acgattaatggcacgctcccattatcacacatgtaa
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