Clupea harengus (Atlantic herring): 105913187
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Entry
105913187 CDS
T09045
Symbol
usp1
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 1
KO
K11832
ubiquitin carboxyl-terminal hydrolase 1 [EC:
3.4.19.12
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
105913187 (usp1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
char01002
]
105913187 (usp1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105913187 (usp1)
03400 DNA repair and recombination proteins [BR:
char03400
]
105913187 (usp1)
Enzymes [BR:
char01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
105913187 (usp1)
Peptidases and inhibitors [BR:
char01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
105913187 (usp1)
Ubiquitin system [BR:
char04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
105913187 (usp1)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
Other FA pathway factors
105913187 (usp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Peptidase_C98
Motif
Other DBs
NCBI-GeneID:
105913187
NCBI-ProteinID:
XP_031430835
Ensembl:
ENSCHAG00000020250
UniProt:
A0A6P8G6C1
LinkDB
All DBs
Position
10:2348827..2357291
Genome browser
AA seq
812 aa
AA seq
DB search
MPGLQADGVVAALGSPIKKSKLSLKFFQKKETKRALDFSETQPEEQNAQPSEAEEPASFD
QVVPGPCPTSPLTCERRENLVPFVGLNNLGNTCYLNSILQVLYHCPGFKEAIKKLYKLSK
CRDKQKEAIKKEEQERTEEEEQVPAQMELLGSFYSLITSVEQLQSNFLLNPDKYSEGELS
TPPRKLLNSLRQLNPMYEGYLQHDAQEVLQCILAYVQEACEGICKEQQQESEPGEKKEEL
STERRSSSSEDDEAGADGQMNGKRKSDTEAGNAKKKPKSQTKGRNTDEEQHQPLTRSKRK
SSRSDITTADAIEHPVNGTQEEKEVEEVQEAEKEEGGGGGSEAEEGKIESAPKEAGKRKK
RARLSWLKTSSGKQPSIFSKFRSMGRLSSRAESREDHGKEAASACKDTADNTTSEKTKSQ
PEKECTPQSEEVQGFDVLKSLFQGQLVLRTRCLECECFTERREDFQDISVPVQEDEPAPR
DSSSEISPEPKPEVKTLKWAISQFASVERIVGEDKYFCETCHHYTEAERSLLFDKTPEVI
TIHLKCFAANTSEMDLYAGLSKVNTPLQTPLRLSLEEWSTGTAPRGQPYQLFAVVMHSGV
TISSGHYTTYIRMSDLRNIGLREEGAAGEEEGRLEEEKELQALKKEEAAAAAATTTTQDY
DDGEVSFSLSARGSSSAPVSTAVTGAKPGVKKSLEGVGLLGGQRSLATYELGGSTKQQQA
SADKGGFPSGSQPLSGGVKKEKDASVAEGAQGTGVTTPALQNLLDYEGKWLLFDDSEVRL
FEEEDFLRACSPETCSTSTPYLLFYRRVAVQK
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgccaggacttcaggcagatggcgtggtggcggcgcttggcagccccatcaagaagagc
aaactctctctcaagttcttccagaagaaagagaccaagcgggcactggatttctctgag
actcagccagaagagcagaatgcacagccttcggaagcagaagaacctgctagttttgac
caggtggtaccaggtccttgtccgacatctcctcttacctgtgaaaggagggagaacctg
gtgccatttgttgggttgaataaccttggaaatacctgctacctgaacagcatcctacag
gtcttgtaccattgccctggatttaaagaggccattaagaaactgtacaagctgtccaag
tgcagagataaacaaaaggaggccatcaagaaggaagagcaggagcggactgaagaggag
gagcaggtccctgctcagatggagctgctgggaagcttctacagtctcatcacttcagtg
gagcagctgcagtccaacttcctgctcaaccccgacaagtacagcgagggcgagctctcc
acgcccccacgcaagctgctcaactcactcaggcagctgaaccccatgtacgagggctat
ctgcagcatgacgcgcaagaggtacttcagtgcatcctggcctacgtacaggaggcctgc
gagggcatctgcaaggagcagcagcaggagtcggagccaggggagaagaaagaggagctc
tccacggagagaaggtcttcctcctccgaggacgacgaagcgggagcggatggccaaatg
aatgggaaaaggaagagcgacactgaggctgggaatgccaaaaagaagccgaaatcccag
accaagggccggaacactgacgaggagcagcatcagcctctcactcgctccaagaggaag
tcctccagaagtgacatcaccacagcggacgccatcgagcatccagtgaacgggacccag
gaggagaaggaggtagaggaggtgcaggaggccgaaaaggaggaaggaggaggaggcggc
agtgaggcagaggaaggaaagattgagagcgcacccaaagaggcgggcaagaggaagaag
cgagcacggctgagctggctgaagacgtcgtcagggaaacagcccagcatcttctccaag
ttccggagcatgggccgcttgagcagccgtgccgagagcagagaggatcatgggaaagag
gccgccagtgcatgcaaggacacagcagacaacaccacatcagaaaagacaaagagtcag
cctgagaaggagtgcacgcctcagagtgaagaggtgcagggctttgatgtgctgaagagc
ctgttccagggtcagctggtgctgaggacgcgctgcctggagtgtgagtgtttcaccgaa
cgccgagaggacttccaggacatcagcgtcccggtccaggaggatgagccggcccccagg
gacagcagttcagagatctctccagagcccaagcccgaggtcaagactttgaagtgggcc
atctcccagtttgcttccgtggagcggattgtgggggaggacaagtacttctgcgagacc
tgccaccattacaccgaggctgagaggagcctgttattcgacaaaacccccgaggtcata
accatccacctcaagtgctttgctgccaacacgtctgagatggacctgtatgcggggctg
tcgaaggtgaacacccccctgcagacgcccctgcggctctctctggaggagtggagcaca
ggcacggcccccaggggccaaccctaccagctctttgccgtggtcatgcacagcggcgtc
accatcagcagcggccactacaccacctacatccgcatgtcggacctccgcaacatcggc
ctcagggaagagggggctgctggggaagaggagggaaggctggaagaggagaaagagctc
caggctctgaagaaagaggaggcagcagcagcagccgccaccaccaccacccaggactat
gacgacggagaggtgtccttcagcttgagtgcacgggggtccagctcggcccctgtgtct
acggctgtgaccggggctaaacctggggtgaagaagtccctggagggagtgggtctgctg
ggggggcagaggagcctggccacctacgagctggggggcagcaccaaacagcagcaagcc
agcgcagacaagggtggctttccctccggctcacagcccctcagcggaggagtgaagaag
gagaaggacgcctcagtggcagagggagcgcagggtaccggggtgacgaccccggccctt
cagaaccttctggactacgaggggaagtggctgctgttcgacgactctgaggtgcgcctg
ttcgaggaggaagacttcctgcgcgcctgctcgcccgagacctgcagcacctccacaccg
tacttactcttctaccggagagtggcggtgcagaagtga
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