Clupea harengus (Atlantic herring): 105913190
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Entry
105913190 CDS
T09045
Symbol
fxr1
Name
(RefSeq) fragile X mental retardation syndrome-related protein 1 isoform X1
KO
K15516
fragile X mental retardation protein
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105913190 (fxr1)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105913190 (fxr1)
Factors involved in mRNA localization
Other mRNA localization factors
105913190 (fxr1)
mRNA cycle factors
Stress granule specific factors
105913190 (fxr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
FXR_C1
KH_9
Tudor_FRX1
FXR_C3
KH_1
Agenet
KH-I_KHDC4-BBP
Tudor_2
Motif
Other DBs
NCBI-GeneID:
105913190
NCBI-ProteinID:
XP_012697673
Ensembl:
ENSCHAG00000019921
UniProt:
A0A6P3WFI2
LinkDB
All DBs
Position
10:complement(4590110..4599962)
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AA seq
686 aa
AA seq
DB search
MEELTVEVRGSNGAFYKGYVKDVQEDSLSISFENNWQPERQFPFTDVRLPPPPDAKKEIG
EGDEVEIFSRANDQEPCGWWLAKVRMTKGDFYVIEYAACDATYNEIVTFERLRPVNQNKP
VTKNSFFRCTVPVPDDIKAACESEQAHKDFKKAVGASRIFYSPEKTQLVVLSKNESTVKR
VPLLSDMHLRSIRTKLMLMSRNEEATKHLESTKQLASAFQEEFNVREDLMGLAIGSHGSN
IQQARKVPGVTAIELDEQSGTFRIYGESAEAVQKARSYLEFVEDSVQIPRNLVGKVIGKN
GKVIQEIVDKSGVVRVRIEGDNDNKLPRQELLSCHKTQGTVPFTFVGTKESIGNVQVLLE
YHIAYLNEVEQLRIERLQIDEQLRQIGMGYRPQPGRPGDKDKGYTTDDAISNMPLHNSRS
YSGRGRGRRGPNYTSGYGTNSDQSNASETESDRKDELSDWSLAAEEPERGQRQQRDSRRR
PGPARGRGAPWGRGRGGGRGGSTSISSVLRDPDGNPYSLLDNTETDQTADTDASDSHANS
TGNRRRRSRRRRTDEDATLIDGMSESDNASLSENGLDDSEAKTQRRNRSRRGQFRPPEER
QPVTVADYISRAESSSRQRNPRDMKKKKDLGQVDSIAEHSPSATPSNGPSNKGGDTGKGQ
RVSAERASKVSYQDNGKKQAVMNGIS
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggaggaactgacagtggaggtccgaggctccaacggagctttttacaagggctatgtc
aaggatgttcaagaagattcactctccatttcctttgaaaataactggcaaccagagaga
cagtttcccttcactgatgtccggttgccgcctcctcctgatgccaagaaggagattgga
gaaggggatgaagtggagatcttctcccgagcgaatgatcaggaaccttgtggctggtgg
ctagctaaagtccgcatgactaaaggagatttttacgtgattgagtatgcggcctgtgat
gccacctacaacgaaatagtcacatttgaacgcctcaggcctgtgaaccaaaacaagcct
gtgacaaaaaacagcttcttcaggtgcaccgttcccgttcctgacgatataaaagcagcg
tgtgagagtgaacaggcacacaaggacttcaaaaaggcagtgggagccagccggatattt
tacagtcctgaaaaaacccagttggtagttttgtccaagaacgaatccacagtcaagcgc
gttcccctgctcagtgacatgcacctgaggagcatccggactaagctgatgctgatgtcc
aggaacgaggaggccacaaaacacctagagagcacaaagcagctggcctcagccttccag
gaggagttcaatgttcgtgaggacctgatgggcctggctattgggagccacgggagcaac
atccagcaggccaggaaggtccctggagtgactgccatcgaattggatgagcaaagtggc
acgttcaggatttacggagagagtgctgaagctgtgcagaaggccagaagctatcttgag
tttgtggaggactctgtccagatacccaggaatttggttggcaaagttattggcaaaaat
gggaaagtaatccaggagattgttgataagtcaggggtggtgagggtacgcattgaaggg
gacaatgacaataaactccctcgacaagagcttctctcatgtcacaagacacagggaacg
gtcccgttcacctttgtcggcacaaaggagagcattgggaacgttcaggttctgctggag
taccacatcgcctaccttaatgaggtggaacagctgcgtattgagcgcctgcagattgac
gagcagctccggcagattggcatgggttacagaccccagcccgggcgtccgggagataag
gacaagggctacaccacggatgacgccatctccaacatgcccctccacaacagccgctcc
tactctggcaggggccgtgggcgcaggggccccaactatacgtctggctatggcaccaac
tccgatcagtccaatgcctctgagaccgagtcggaccgcaaggacgagctgagtgattgg
tccctggcggccgaggagccggagcggggccaacggcagcagagggacagccgccggagg
ccaggccctgcacgcggccgaggggcaccctggggtagaggccgtggaggaggaagaggc
ggctcgacctccattagctctgtgcttcgtgaccctgacgggaacccttacagcctgctg
gacaacaccgagaccgaccagacggccgacacagacgcaagtgattctcacgccaacagt
acaggaaaccgccgccgcaggtctcgccgccgccgcactgacgaggacgccaccctgatc
gatggcatgagcgagtctgacaacgcctcgctcagcgagaacggcctggatgattcagag
gcaaagacgcagcgacgtaaccgtagcaggcgtggccaattccgccctcctgaggagagg
cagccagttacggtggcggattacatatcacgtgctgaatcgtcaagccgacagaggaac
ccaagagatatgaaaaagaagaaagatttgggtcaagtggactccattgcagagcacagc
ccctccgcaaccccgagcaatggccctagcaacaaaggtggggacactggcaaaggtcag
cgagtctctgccgaaagggcatcaaaagtcagctaccaggacaacggaaagaagcaggcc
gtcatgaacgggatctcttaa
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