KEGG   Clupea harengus (Atlantic herring): 105913200
Entry
105913200         CDS       T09045                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03030  DNA replication
char03410  Base excision repair
char03420  Nucleotide excision repair
char03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105913200 (rfc4)
   03410 Base excision repair
    105913200 (rfc4)
   03420 Nucleotide excision repair
    105913200 (rfc4)
   03430 Mismatch repair
    105913200 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:char03032]
    105913200 (rfc4)
   03036 Chromosome and associated proteins [BR:char03036]
    105913200 (rfc4)
   03400 DNA repair and recombination proteins [BR:char03400]
    105913200 (rfc4)
DNA replication proteins [BR:char03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    105913200 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    105913200 (rfc4)
Chromosome and associated proteins [BR:char03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    105913200 (rfc4)
DNA repair and recombination proteins [BR:char03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     105913200 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    105913200 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA AAA_lid_RFC1 RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA_assoc_2 AAA_16 AAA_11 Mg_chelatase AAA_22 AAA_30 SLFN-g3_helicase DUF815 AAA_14 ResIII AAA_24 RuvB_N AAA_5 Gp44_lid AAA_19 AAA_28 AAA_7 DUF5338
Other DBs
NCBI-GeneID: 105913200
NCBI-ProteinID: XP_012697693
Ensembl: ENSCHAG00000013734
UniProt: A0A6P3WFJ8
LinkDB
Position
10:4293585..4300509
AA seq 357 aa
MQAFLKGTSSQSIKLQKDKAAGSSGEKKPKAVPWVEKYRPKCVDDVAYQEEVVAVLKKSL
EGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVRKKVKTF
AQLTAAGSRPDGKPCPPFKIIILDEADSMTNAAQACLRRTMEKEARTTRFCLICNYVSRI
IEPLTSRCSKFRFKPLANGIQEERILEICKKENLKYTQQGIDELVRVSEGDLRKAITYLQ
SAARLNADAEITESIILEIAGVVPPNVIDNLLQICHKGTFDKMQIEVKNMIDDGYAATQI
LNQLHDCIIEGHLNDKQKSVVAEKMAVVDKNLADGADEYLQLMSLTSVIMQQATQSS
NT seq 1074 nt   +upstreamnt  +downstreamnt
atgcaggcgtttctgaaaggaacatccagccagagcatcaagcttcagaaggacaaagca
gctggatcgagtggggaaaagaaacccaaggctgtaccatgggtagagaaatatagacca
aagtgtgtggatgatgtggcctatcaagaggaggtggttgctgttttgaagaaatcattg
gagggcgccgatttgcccaatttactgttctatgggcctcccggtacaggaaagacctcc
accatcctggcagcagctagagagctctatggacctgagctgtaccgacagcgggtgttg
gagctcaacgcctctgatgaacgagggatccaggtggtccgaaagaaagtgaagaccttt
gcccagctaactgcagcaggatctcgtcctgacgggaagccttgtcctccgtttaagatc
atcattcttgacgaggcggactccatgaccaacgcagcccaggcctgcctcagacgcacc
atggagaaggaggcgcgcaccacacgcttctgcctcatctgcaactacgtcagcaggatc
attgaaccgctgacatccagatgctccaagttccgtttcaagcctcttgccaatggcatc
caggaggagagaatcttagaaatctgcaagaaggagaacctgaagtacacccaacaggga
attgatgagctggtgagggtgtcggagggagatctgaggaaagccatcacatatttacag
agtgcagccaggctcaatgcagatgcagagatcacagagagtatcatattagagatcgct
ggggtggtaccccctaatgtcatagacaatctgcttcagatatgtcacaaaggaactttt
gataaaatgcagatagaagtcaagaatatgattgatgatggctatgctgctacacagatt
cttaatcagctacatgactgcatcatcgagggccacctcaatgacaagcagaaatcagtc
gttgctgaaaaaatggcggtggttgataagaatttagctgatggagctgatgaatatctg
cagttgatgagtctgacctcagtgataatgcagcaagcaactcagagctcctga

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