KEGG   Clupea harengus (Atlantic herring): 105913275
Entry
105913275         CDS       T09045                                 
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
  KO
K16474  intraflagellar transport protein 88
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:char03037]
    105913275 (ift88)
Cilium and associated proteins [BR:char03037]
 Primary cilia and associated proteins
  Intraflagellar transport (IFT) complex B1
   105913275 (ift88)
SSDB
Motif
Pfam: TPR_2 TPR_1 TPR_12 TPR_8 TPR_6 TPR_14 TPR_7 TPR_19 TPR_16 TPR_11 TPR_17 ANAPC3 TPR_9 SNAP TPR-S ARM_TT21_5th TPR_CcmH_CycH TPR_10 ARM_TT21_4th MIT NatA_aux_su ARM_TT21_C TPR_15 HAT_PRP39_C Consortin_N RPN7 DUF6584 HEAT_Nup120 Coatomer_E ARM_TT21 ARM_TT21_2nd RNPP_C DUF2225 SHPRH_helical-1st
Other DBs
NCBI-GeneID: 105913275
NCBI-ProteinID: XP_031439022
Ensembl: ENSCHAG00000005740
UniProt: A0A6P8GU10
LinkDB
Position
2:complement(13339112..13356959)
AA seq 891 aa
MENVHLAAENEDDLYSGYNDYNPTFDNEELDNDIGFQQAVRTSHGRRPPMTAKFPGTAIG
ARPVGTSYGQARTQMSSSMGRPMTGAVQDGAARPMTAVRAAGYSSALTRGSTFDPLGQSK
GPAPALEAKMEDSPEEKIKILEKKVNDLIEESCMAYSRGDLQLSLEKAKEAGRKERVLVR
QREQTGTADHINLDLTYSVLFNLANQYANNDMFQEALNTYSVIVKNKMFSNAGRLKVNMA
NIYFKQKNYPKAIKFYRMALDQISNAHKEMRIKIMQNIGVVFVKMGQYSDAITSFEHIMS
ECPNIKSGFNLILCYYAIGDRDRMKKSFQKLISAPLGIDDEDKYIPASEDPHTNMVIEAI
KNDPLHQMERDRKSLAEKYIMTSAKLIAPAIENSFAAGFDWCVDMVKSSQYVELANDLEI
NKAITYLRQRDFNQEEAVETLKTFEKKDSRVKSAAATNLSFLYFLEKDFDLADRYADMAM
SADRYNPAALINKGNTVFVRQDYEKAGEFFKEALRNDSSCTEGLYNLGLTYKKLGRLDEA
LDCFLKLHAILRNCAQVMFQLACLYEMLEDPHQAIDWLMQLISVTPTDPQVLAKLGELYD
TEGDKSQAFQYYYESFRYFPSNIDVIEWLGAYYIDTQFCEKAIQYFERATLIQPTQVKWQ
LMVASCYRRSGNYQKALDTYKDIHRNFPENVECLRFLVRLCTDMGLKEVQEYATKLKKVE
KMKEIREQRVKSGRESSARGRREGSAGSVNTQPLRTPPKSSSDFEVRPGERCRSGRDSRL
HTHTHTHTHRERHTQTHTQSCTHSILSLLILHLVTFHFTFQQYQLLSFTVRLILFSCLSL
CVSSCSPVSPPVSTSSLWTPGVELQPLPVWSTLPLRECLVGGLKMNTFYID
NT seq 2676 nt   +upstreamnt  +downstreamnt
atggagaacgttcatctcgctgcagaaaatgaagatgacctgtactcgggctataatgat
tacaacccaacatttgataacgaggagcttgataatgacattgggttccagcaagctgtc
agaactagccatgggcgaagaccaccaatgactgccaagttccctggcacagctattgga
gcccggcctgtggggacctcttacgggcaggccaggactcagatgagctcgtccatgggt
cggccgatgactggtgctgtgcaggatggggcagctcgacctatgactgcagtaagggca
gcgggatactcctctgctttgaccagaggttcaacctttgatccactgggccagtcaaag
ggccctgcccctgcgctagaggcaaaaatggaagactccccagaggagaagatcaagatc
cttgagaagaaggtgaatgatctgattgaggagagctgcatggcttacagtcggggggac
ctacagctgtctctggagaaagccaaggaagctggaagaaaggagagagttctggtgaga
cagcgagagcagaccggaaccgctgaccatatcaatctggacctcacctactctgtgctg
tttaatttagccaaccagtacgccaacaatgacatgtttcaagaggctttgaacacttac
tctgtcattgtgaagaataagatgtttagtaatgcaggacgtttgaaagtaaacatggcg
aacatttacttcaagcagaagaactacccaaaagccatcaaattctaccgtatggctttg
gatcagatatccaacgcccacaaggagatgaggataaagatcatgcagaacatcggcgtc
gtgttcgtaaagatgggccagtactcggacgccatcacctcctttgagcacatcatgagc
gagtgccccaacatcaagtccggcttcaacctcatcctctgctactacgccatcggggac
cgcgaccgcatgaagaagtccttccagaagctcatcagcgcccccctcggcatcgacgac
gaagacaaatacatcccagccagtgaggaccctcacaccaacatggtgattgaggccata
aaaaacgacccgcttcatcaaatggagagagatagaaaatcactggcggagaagtacatc
atgacatcagcgaagctcattgcccctgccattgagaacagctttgctgctgggtttgac
tggtgtgtggacatggtgaagagctctcagtatgtggagctggccaacgacctggagatc
aacaaagccatcacctacctgaggcagagggacttcaaccaggaggaggctgtggagact
ctgaagacctttgagaagaaggacagccgggtcaagagtgccgccgccaccaacctctcc
ttcctctacttcctggagaaggactttgacctggctgaccgctacgccgacatggccatg
agtgctgaccgctacaacccggccgcgctcatcaacaagggcaacaccgtgttcgtgagg
caagactacgagaaggctggagagttcttcaaagaggctctgcgcaacgactcgtcctgc
accgaggggctctacaacttgggtctgacctataagaagctggggcggctggacgaagcc
ctggactgcttcctgaagctccacgccatcctgaggaactgcgcccaggtcatgttccag
ctggcctgtctctatgagatgctggaggacccccaccaggccattgattggctgatgcag
ctgatcagcgtcacgcccactgacccccaggtgctggcaaagctgggggagctctacgac
actgagggggacaagtcccaggccttccagtactactatgagtccttcagatatttcccc
tccaatattgacgtcattgaatggctgggagcatactacattgacacccagttttgtgag
aaggccattcagtactttgagcgagccactctcattcagcccacacaggtgaagtggcag
ctcatggtagccagctgctacaggagaagcgggaattaccagaaggcgctggacacctac
aaagacatccatcggaactttccagagaatgttgaatgcctgcgtttcctggtgaggctg
tgcactgacatggggctcaaggaggtgcaggagtacgccaccaagctcaagaaggtggag
aagatgaaggagatcagagaacagagggtgaagtcggggcgagagagcagcgctcgtggc
cgtagagagggcagtgctggcagtgtcaacacacaaccccttcgcactccacctaagagc
tccagtgatttcgaggttagaccaggtgagagatgcagatcaggaagagatagtcggcta
cacacacacacacacacacacacacacagagagagacacacacagacacatacacagtcg
tgcacacactccatcctttcactgttgatccttcacttggtaacctttcacttcaccttt
caacagtatcagttattgtctttcactgtgcgtctcattctgttctcttgtctttcgctg
tgcgtctcatcctgttctcctgtgtctcctcctgtatccacctcatctctctggactccc
ggtgtggagctgcagcctcttccagtctggtccacactccccctaagagagtgcctggta
ggaggcctgaagatgaatacattttatatagattag

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