Clupea harengus (Atlantic herring): 105913373
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Entry
105913373 CDS
T09045
Name
(RefSeq) transcription intermediary factor 1-alpha-like isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
char01001
]
105913373
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105913373
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105913373
Protein kinases [BR:
char01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
105913373
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
105913373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
PHD
Bromodomain
zf-RING_UBOX
zf-C3HC4
DUF5054
Syntaxin
USP7_ICP0_bdg
DUF1319
Motif
Other DBs
NCBI-GeneID:
105913373
NCBI-ProteinID:
XP_031420795
UniProt:
A0A6P8FAK3
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All DBs
Position
3:complement(21821557..21834702)
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AA seq
993 aa
AA seq
DB search
MHESSERTGSWDVAFMENEAEGVSARKETGKQLCTLSNQEICAACQQNFHNREPMLLPCL
HSLCKTCVPLPWRSLMVPDQPGASPVDQGSKPLNVIRCPVCRQEFMDVDVMENFFLRDSV
EMSSSTVDKPFQLCMSCDDNTEASGFCEQCVEFLCVTCIDAHQRVKFTKDHHIRQQEELS
QILGISTPKPVFCDVHKQEPLKLFCETCDRPTCRDCQLLKHKDHNYQFLEDAYRNHRQNM
EEMICQLQEKRKSIEDISDSINNGIAKADENYTTVHNEIKTSMCSLILEINRKGKILLNQ
LETLTKDNRNSLRKQQQDVSSLSRHLDHVITFTKWATGHSGGTALLYCKRLILFQISNLL
KTKCSTAFVPQSIVHFQCQAGYWTSNVELGSLMVENIQGPQLNGFQGIYPVNHLGQGYPV
GLPPGTSQQPKPPHSTLAQLQMQVEKLAKQQPPTAPLAPPPHWSWSQSVPLPRPPSIRPP
RSSAPQGFHPMPQQGRGFMPPHYHQMSPIGAMKSPGSPSQALQNLRGLVNSPGCPSKHMD
VIQTRSALLYSHSAPLPTSDRLSSPLSLQERNDLAFSSPLLRPTFPQTTFIPGSVAPGYP
NYCKPPYAHPDTETKVPVRTQQFSSAAKRRRHSSPGPIIIIKDEPDEKDDVRYMQCTMRP
SLPDSTGDQGNRNSAHKDGSHHSTGVQTLVSQHKTPDWLLPAQPRSTEETSQVPQQGMTD
QSSVLFQNCSKTSQHPEADEQTQASRPSPGYLSSSGGCYNDHTQKPQQSAEVQPKGHIES
TSNPQPSQAPSGRHTTVNEPASAEDLSEDCCRVCQTGGELLCCDKCSKVYHSSCHIPPLP
KSPRGQWFCTLCRDLYTPEMEYDSEILAETTMKNEASSIMKPVDKRKCERLLLQIYCSEL
SADFRLSLPSTFEPKQCYSSKTPVQLAVVKSKLESKHSSCYYSPAEFVSDVRVVFRNYSN
FYEKDSVVEAAAASLEKFFEEQLKSVFLEIAFP
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgcacgagagctccgagagaacgggatcttgggatgttgcctttatggagaatgaggca
gagggcgtatcagctaggaaggaaactggcaagcagctttgcacgttgagcaatcaagaa
atctgtgcagcatgccagcagaatttccacaaccgcgagcctatgctgttgccatgtctt
cattcattgtgcaagacctgtgtgccattgccctggcggagtttgatggtccccgatcaa
ccaggagcatctcccgtcgatcaggggtcgaaaccactgaatgtgatccgctgtccagtg
tgccggcaagagttcatggatgtggatgtgatggagaacttctttttgagggactctgta
gagatgtccagttccacggttgataagccttttcagctttgtatgagttgtgatgacaac
actgaggcctctggcttctgcgagcagtgtgtggagtttctgtgtgtcacctgcattgat
gctcaccagagggtgaagttcaccaaggaccaccatatccgacagcaggaggagctatca
caaatactggggatctccacaccaaagccagtcttctgtgatgttcacaaacaagagccc
ctgaagttgttctgtgagacatgtgatcgtcccacatgcagagactgccagctgctgaag
cacaaagaccacaattatcagtttttagaagatgcctatagaaaccacagacagaacatg
gaggaaatgatttgtcagctacaagagaaaaggaaaagcattgaagacatttcggactca
ataaataacgggattgctaaagctgatgaaaactacacaacagttcacaatgagatcaaa
acttcaatgtgcagtttgattttagagattaacagaaagggaaagattctgttaaaccag
ttggagactcttactaaggataaccgcaacagtcttaggaagcaacagcaggatgttagt
tccttatccaggcacttggatcatgtgatcacctttaccaaatgggccactggacacagt
ggtggcactgctctcctctactgcaaacgcctgattctctttcagattagcaacctgctg
aagactaaatgcagcacagcatttgtgccacagagcatcgtgcacttccaatgtcaggca
ggatattggacctccaatgttgaactcggctctttaatggtggaaaacatccaaggtcct
cagctgaatggcttccagggcatctaccctgtgaatcatctggggcagggctaccccgta
ggcctccctccgggtacctcccaacagcccaagccaccgcacagcacactggctcagctc
cagatgcaggtggagaaactagccaaacagcagccaccaacagcaccgttggctccacct
ccccactggtcatggtcccagagcgtgcctctcccccggcctccatccatccggcccccg
agaagctcggcaccacagggctttcatcctatgcctcagcagggtagggggtttatgcca
ccccactaccaccagatgagtcccatcggtgctatgaaaagccctggatcaccaagtcag
gctctccagaatttaaggggacttgtgaacagccctggctgtccatccaagcacatggac
gtcatccagactcggagcgcacttctgtactcccacagtgcacctctgcctaccagtgac
agactgagctctcccctctcgctacaggagaggaatgacctggctttctcctcaccttta
ctaaggcccacctttccacaaacaacctttattccaggaagtgttgctccaggatatcca
aattattgcaaacctccttatgcccaccctgacacagagactaaggttcctgttaggact
cagcaattcagctcagctgcaaagcgtcgcagacactcatctccaggacccatcatcatc
attaaggatgagcctgacgagaaggatgacgtgagatatatgcaatgcacaatgagaccc
agtcttccggacagcacgggggatcaaggcaatcgaaacagtgcacacaaagatgggtct
caccacagcactggggttcaaactctggtttcacagcacaaaacaccggactggctcctg
cctgctcagcccaggagtacagaggaaacctcgcaggttccacaacagggtatgaccgac
cagtccagtgttctgttccaaaactgttccaaaacttctcagcatcctgaggcagatgag
caaacccaggcctcacgacccagcccggggtatctctcctcctctggtggttgctataac
gaccacacacaaaagcctcagcagagcgccgaggtccagccgaaaggtcacattgagagc
accagcaacccacagccgtcccaggccccttcagggaggcatacgactgtgaacgaacca
gcatcagcagaggacctcagtgaagactgctgcagagtgtgccagactggaggagagctg
ctgtgttgtgacaagtgttcaaaagtgtaccacagctcctgtcacatcccccctctcccc
aaatcgccacgtgggcagtggttttgcacactttgccgagacctctacacacctgagatg
gagtatgacagtgaaatccttgcagagaccacaatgaagaatgaggcctcttccattatg
aagcctgtggacaaaaggaaatgtgagaggcttctactacaaatatactgcagtgaatta
agtgcagacttccggctgtccttgccctcaaccttcgaacccaaacagtgttattcaagt
aagacgccagtgcagcttgcagtggtgaaaagcaagctggagtcgaagcacagctcctgc
tactacagccctgcggagtttgtttctgatgtgagagttgtcttcagaaactactccaac
ttttatgagaaagattcagttgttgaggctgccgcagcaagcctggagaagttctttgag
gagcagctgaagagtgtgtttcttgaaatcgcatttccttaa
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