Clupea harengus (Atlantic herring): 105913405
Help
Entry
105913405 CDS
T09045
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105913405
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105913405
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
105913405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
105913405
NCBI-ProteinID:
XP_031420833
Ensembl:
ENSCHAG00000022707
UniProt:
A0A6P8EX49
LinkDB
All DBs
Position
3:complement(22419741..22518618)
Genome browser
AA seq
950 aa
AA seq
DB search
MEFSAIKNCDDIFSGFCQKGCGLLHHKNAVNEVDHCCMTALRDRNEVLQAWNDKIASEVR
KLCITWGKREQFLLSQLTALQNEAQVSAVKYQQRLKQYMLSISSILDQISGSYESGQLQR
LTITLLRTEGILGFRIMGGELDQTDSEGSGIFVSHVSVEGPAGRADGLQVHDRVLEVNGK
DLSRASHEEAVEAFRSAKDPIVVQVLRRNPVARGHGPTQEVQVVDVCTQTEITFEHIMAL
AKLRPSTPPVPDICPFLLSDSCQSLHTMEQEFYDGSEYLSNMAVDVERTDDFEYEEVELC
RLSSQEKLGLTLCYRTDEEDDNAIYVSEVGPNSIAARDGRIREGDRILQINGQDVQDREE
AVAVLSSEDCRNIMLLVARPELQLEDGWLDDEHSEFLEELKMEMLEEQRREDEEMERAAK
LQDQLRKRPEGDIIGDSTATCSSSANQDKDSGLGHTDVSSEQDMLAHIQKRLSQCLRERR
EACHPAEGPVSGSRCPGEEPVAEGDRFQQLLELKCQIRNSGEYDLFYSRSSTIECSLTEP
SGMGGGGGVERELRMLNEELRSIELECQNIMQAHQLRKREPRQALAKEQGSPSRQHQSQA
GGSGTAGKLANIKEHPEKSDKDSSSAYNTAESSRSTPLAMDRSPEHSLQRIVSLTNQRNL
RSTLAAGRCPSSPLSSYCPARRAPSGSPDHSNPSESDQTLPADDEASPAHQQQALRPSRI
PYFSPSHNSPLRHTNIPAHARHYQSYMHLIQQRSAVEYSQSQLSLFSMCPDPQPSAEQQQ
QSSDVNDPKLEWKVKVRSDGTRYITKRPVRDRLLRERALKIKEERSGGMTTDDDAMSEMK
MGRYWSKEERKQQLTRAKEQRRRREFMQRSRLESLRENPQSGGEGSGSGPGSGSPRKEVS
IIELSHRKMMKKRNKKILDNWMTIQELMTHGAKAPEGAKVHNAFLSVTTV
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggagttttcagcgataaagaactgtgatgatatattttcgggtttttgtcaaaaggga
tgcggactactccaccacaaaaatgcagtgaatgaggtggaccattgctgtatgacagca
ctacgggatcgaaacgaagttttgcaggcgtggaatgacaaaattgcgtccgaagtcaga
aaactctgtattacctggggaaaacgggagcaatttctgctatcccaattaacagctcta
cagaacgaagcacaggtcagcgccgtgaaataccagcagaggctaaagcagtatatgctt
tccatcagtagcatattggatcagatcagtggctcatatgagagtggacagcttcaacgt
ttgaccatcaccttgctaagaacagagggaattttgggattccgaattatggggggagaa
cttgatcagactgactcagaaggatctgggatctttgtgtcccacgtgtctgtggagggt
cctgctggcagagcagacggtctgcaggtgcatgaccgggtactggaggtgaatgggaag
gacctctccagggccagccatgaggaggctgtggaggcctttcgcagtgccaaggacccc
atcgtggtgcaagtcctccggcgaaaccccgtggcacggggccatgggcccactcaggag
gtccaggtggtggatgtgtgcacgcagacggagatcacgtttgagcacatcatggctttg
gctaagctacgcccgtcaacaccacctgtgcctgatatctgcccatttctgctctcagac
agttgccagtcgctccacaccatggagcaggagttctacgacggctcggagtacctctcc
aacatggcggtggacgtcgagaggacggatgactttgagtacgaggaggttgagctgtgt
cggctgagcagtcaggagaagctgggcctgaccctgtgctacaggacagacgaggaggat
gacaacgccatctacgtcagtgaggtcggcccgaacagcatcgccgccagagacggtcgc
attcgagaaggggaccgcattttgcagataaatgggcaggatgtgcaggaccgagaggag
gcggtggcggtgctctccagtgaggattgcaggaacatcatgctgctggtggcgcggcct
gagctgcagctggaggatgggtggttggatgatgaacacagcgagttcctggaggagctg
aagatggagatgctggaggagcaaagaagagaggatgaggagatggagagagctgctaag
ctacaagaccagctcaggaagagaccggagggtgacatcatcggcgactcgacggccacc
tgttcctcctccgccaaccaggacaaggacagcgggctgggccacactgacgtcagctcg
gagcaggacatgctggcgcacatccagaagaggctgtcccagtgcctgcgtgagcgccgg
gaggcctgccaccctgccgaggggcccgtctcggggagccggtgcccgggggaggagccc
gtggcggagggcgaccgcttccagcagctgctggagctcaagtgccagatccgcaacagc
ggagagtacgacctgttctacagccgcagcagcaccatcgagtgcagcctgacggagccc
agcggcatgggcggcggcggcggcgtggagcgggagctgcgcatgctgaacgaggagctg
cgcagcatcgagctggagtgccagaacatcatgcaggcgcaccagctccgcaagcgggag
ccgcggcaggcgctggccaaggagcagggcagcccgagccggcaacaccagagccaggct
ggaggcagcgggacggcaggaaagctggccaacatcaaggagcacccggagaagtcggac
aaggacagttcgagcgcctacaacacggcggagagctcgcgcagcacgccgctggccatg
gaccgctcgcccgagcactcgctgcagaggatagtcagcctgaccaaccagcgcaacctc
cgcagcaccctggccgccggacgctgtccttcctccccgctgtcctcctactgccccgcc
cgccgcgcccccagcgggagccccgaccacagcaacccgtccgagtcggaccagacgctg
ccggccgacgacgaggcctctcccgcccaccagcaacaggctctgcggccctcgcgcatc
ccctacttctcgcccagccacaactcgccgttacggcacaccaacatcccggctcacgcc
cgccactaccagagctacatgcacctgatccagcagcgctcggctgtggagtactcccag
agccagctcagcctgttcagcatgtgcccggatccgcagccttcagcggagcagcagcag
cagtcctcggatgtcaacgaccccaagctggagtggaaggtgaaggtgcgcagcgacggc
acgcggtacatcaccaagcggccggtgcgcgaccggctgctccgcgagcgcgcgctcaag
atcaaggaagagcgcagcggcggaatgacgaccgacgacgacgccatgagcgagatgaag
atgggccgctactggagcaaagaggagcgcaagcagcagctgacccgggccaaggagcag
cggcgccggcgggagttcatgcagcgcagccgcctggagagcctgcgcgagaacccgcag
agcggcggggagggctcgggctccggcccgggctcgggatcgccccgcaaggaggtcagc
atcatcgagctcagccaccgcaagatgatgaagaagcgcaacaagaagatcctggacaac
tggatgaccattcaggaactgatgactcacggcgccaaggcgcccgagggagccaaagtc
cacaatgccttcctgtccgtgaccactgtatag
DBGET
integrated database retrieval system
