KEGG   Clupea harengus (Atlantic herring): 116218716
Entry
116218716         CDS       T09045                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03013  Nucleocytoplasmic transport
char03015  mRNA surveillance pathway
char03040  Spliceosome
char05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116218716 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    116218716 (alyref)
   03015 mRNA surveillance pathway
    116218716 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    116218716 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    116218716 (alyref)
   03041 Spliceosome [BR:char03041]
    116218716 (alyref)
Messenger RNA biogenesis [BR:char03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     116218716 (alyref)
    TREX complex
     116218716 (alyref)
Spliceosome [BR:char03041]
 Complex C
  Other components
   EJC/TREX
    116218716 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    116218716 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 116218716
NCBI-ProteinID: XP_031417164
Ensembl: ENSCHAG00000003444
UniProt: A0A6P8EXU3
LinkDB
Position
23:23347284..23353033
AA seq 278 aa
MADKMDMSLDDIIKQSKRGGGGRGGRGGRGRGGAGGGRGGGVGRLGGAGGGFGGRGGGSG
PMRNRQPLSRGRSRPTPYNRPKQLPEKWQHDMYDNGFSSMGGGGGGGGGAGVETGGKLLV
SNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALKAMKQYNGVP
LDGRPMNIQLVTSQIDTQQRRPMQGLNRGGGGGVGGMNRSRVGGFVQRGGRGGGGRGAGG
PRGRGRGRGGGRGDNKQQLSAEELDAQLDAYNARMDTT
NT seq 837 nt   +upstreamnt  +downstreamnt
atggcagataagatggatatgtccttagatgatatcatcaaacagagtaagcgcgggggt
gggggtcgcggtggaagaggcggccgcggccggggaggtgcaggcggaggtcgcggtggt
ggcgtcgggcgactcggaggcgccggcggaggctttggaggccgaggcggcggatcaggc
cccatgaggaatcggcaaccgctgagccgcggtagaagcagaccaacgccgtacaacagg
cccaagcagctccccgaaaagtggcagcacgacatgtacgacaacggcttcagctccatg
ggcggcggcggaggaggtggaggaggcgcgggggtcgagaccggagggaagttgctcgtg
tccaacctcgatttcggtgtgtcggacgcagatatccaggaactgtttgcagagttcggc
accctgaagaaagcggcggttcactacgacagatctggccgaagcctcggaacggcggac
gtccacttcgagaggcgagccgacgccctcaaggccatgaagcagtacaacggcgtcccc
ctcgacgggcgaccaatgaacattcagctcgtcacgtcacagatcgacacacagcagcgg
cggccgatgcaggggctgaaccgcggcggtggtggcggcgtcgggggcatgaacaggagc
agagtggggggcttcgtccagagggggggtcgcggcggaggcggtcgaggggccggcgga
cccagaggtcggggcaggggtcgcggcggcggccgaggagacaacaaacagcagctgtct
gccgaggagctggacgcccagctagacgcctacaacgccaggatggataccacctaa

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