Clupea harengus (Atlantic herring): 116218716
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Entry
116218716 CDS
T09045
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03013
Nucleocytoplasmic transport
char03015
mRNA surveillance pathway
char03040
Spliceosome
char05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116218716 (alyref)
09122 Translation
03013 Nucleocytoplasmic transport
116218716 (alyref)
03015 mRNA surveillance pathway
116218716 (alyref)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
116218716 (alyref)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
116218716 (alyref)
03041 Spliceosome [BR:
char03041
]
116218716 (alyref)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116218716 (alyref)
TREX complex
116218716 (alyref)
Spliceosome [BR:
char03041
]
Complex C
Other components
EJC/TREX
116218716 (alyref)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116218716 (alyref)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
116218716
NCBI-ProteinID:
XP_031417164
Ensembl:
ENSCHAG00000003444
UniProt:
A0A6P8EXU3
LinkDB
All DBs
Position
23:23347284..23353033
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AA seq
278 aa
AA seq
DB search
MADKMDMSLDDIIKQSKRGGGGRGGRGGRGRGGAGGGRGGGVGRLGGAGGGFGGRGGGSG
PMRNRQPLSRGRSRPTPYNRPKQLPEKWQHDMYDNGFSSMGGGGGGGGGAGVETGGKLLV
SNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALKAMKQYNGVP
LDGRPMNIQLVTSQIDTQQRRPMQGLNRGGGGGVGGMNRSRVGGFVQRGGRGGGGRGAGG
PRGRGRGRGGGRGDNKQQLSAEELDAQLDAYNARMDTT
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atggcagataagatggatatgtccttagatgatatcatcaaacagagtaagcgcgggggt
gggggtcgcggtggaagaggcggccgcggccggggaggtgcaggcggaggtcgcggtggt
ggcgtcgggcgactcggaggcgccggcggaggctttggaggccgaggcggcggatcaggc
cccatgaggaatcggcaaccgctgagccgcggtagaagcagaccaacgccgtacaacagg
cccaagcagctccccgaaaagtggcagcacgacatgtacgacaacggcttcagctccatg
ggcggcggcggaggaggtggaggaggcgcgggggtcgagaccggagggaagttgctcgtg
tccaacctcgatttcggtgtgtcggacgcagatatccaggaactgtttgcagagttcggc
accctgaagaaagcggcggttcactacgacagatctggccgaagcctcggaacggcggac
gtccacttcgagaggcgagccgacgccctcaaggccatgaagcagtacaacggcgtcccc
ctcgacgggcgaccaatgaacattcagctcgtcacgtcacagatcgacacacagcagcgg
cggccgatgcaggggctgaaccgcggcggtggtggcggcgtcgggggcatgaacaggagc
agagtggggggcttcgtccagagggggggtcgcggcggaggcggtcgaggggccggcgga
cccagaggtcggggcaggggtcgcggcggcggccgaggagacaacaaacagcagctgtct
gccgaggagctggacgcccagctagacgcctacaacgccaggatggataccacctaa
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