Clupea harengus (Atlantic herring): 116220003
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Entry
116220003 CDS
T09045
Symbol
cdhr5b
Name
(RefSeq) cadherin-related family member 5 isoform X1
KO
K16505
cadherin-related family member 5
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
char04515
]
116220003 (cdhr5b)
Cell adhesion molecules [BR:
char04515
]
Cadherins
Cadherin related
116220003 (cdhr5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
PAP1
Motif
Other DBs
NCBI-GeneID:
116220003
NCBI-ProteinID:
XP_031420593
Ensembl:
ENSCHAG00000018399
UniProt:
A0A6P8EWF2
LinkDB
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Position
3:complement(15992226..16004475)
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AA seq
751 aa
AA seq
DB search
MTRPGLRTPGTLIPAALLLLTLLGQCQAQQTFCQLPPGDQVIQLPENTALDAVITTIIVQ
EGVALTLGDDFGGTFALTGPRVVLKIGLDYETLKDYRLEIGCAKEAETVAAISVLIVVGN
INDNPPVFEKMTYELAVNELVAVETEVGRVTATDLDGLGSLYYRIVPPQEYFDLQNINLP
AIKVKKRLDYDTIKKVEFTVVVQDTQTSAPPSFSATTTVIINILDIDNRPPWFQPCVETD
INLAKVCINSGYQGKVTATQQETGTLPLQPGRLHAMDGDKGLEAAISYRLLSGNVNDIFA
INPNTGDITMQKPVDVAGPIVLTVMAYQTTNPDQFATTTVVLEVKKMSLHPPRFDKDAYE
GYISLDAGVDSLVLEGKDSSKPLRVQATDQDFADGVNPDVTYEVQDNSDFTITEQGFILM
TRSVPAGPLSIQVRAVDAVSGQEDVAAVQVEVAPETPTTTAMPSTTADTSTATTDMSTAT
TDMSTATTDMSTATTDMSTATSEVMTSSASHITSPESSEPTSPQSTTEGPRVQAGAYRTE
DMAALGASLGVLLLICLLFITLMAVHIKNHKTDWKKLKEVSHFHNNLAGVAPGLKSGVQY
SNEGFQNTGDSGSTRSSRYSDEPDLMMDKVKPSKARAVEAPVTRSVAPQLGMVLSDASSL
AESSTSEGGKEVKPILTKERKDDEGYKAVWFKTDIDPNAKEEVTIIPERAEQDDDDDVDD
VNEVDDDADDEDNEDNDDASVGGYYPQTSDL
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgacccgtccgggcctccgcaccccagggaccctgatccccgccgccctgctcctgctg
accctcctagggcaatgtcaggcccagcagaccttctgccagcttccccctggcgatcag
gtcatccagttgcctgaaaacacggcattggatgctgttattaccacgatcattgttcaa
gagggggtggctctcaccctcggagacgacttcggagggacatttgccctgacaggacca
agggtcgtcctgaaaataggtttagactatgagactttgaaagattatcgtctggagatt
gggtgtgccaaagaagctgagaccgtcgctgccattagtgtcttaatcgtcgtggggaat
ataaatgataaccctccagtatttgagaagatgacctatgaactggcagtcaatgagctg
gttgctgtggaaacagaggtcggccgtgtgactgccactgatcttgatggattgggctca
ctgtattaccggatcgtgcccccccaggaatactttgatctgcagaacataaacctgccg
gccatcaaggtgaagaagcgccttgattatgacactattaaaaaagtggagttcactgtg
gttgtccaggacacacagacctcggccccaccatcttttagcgctaccactacagtcatc
atcaacatcttagacatcgacaaccggccgccctggtttcagccctgtgttgagactgat
atcaaccttgccaaagtctgcatcaactcaggctaccagggaaaggtcactgcaacacag
caagagactggcactctgcctttacagccgggacgccttcatgctatggacggcgataag
ggcctcgaagcagcgatttcctacagattgctgagtggaaacgtgaatgacatctttgcc
atcaacccaaacactggagatattacaatgcagaaacctgttgatgtggcaggtcctatt
gttctgacagttatggcttatcagacgaccaatccagatcagttcgccacgacaacagtg
gtgctggaggtgaagaagatgagcctgcatccaccccggtttgacaaggacgcctacgaa
ggctacatctccttggacgcaggcgtggacagtctggtgctggaagggaaggactccagc
aaaccgctcagggtgcaggccacagaccaggactttgctgatggggtgaatcctgacgtg
acgtatgaggttcaggacaacagtgacttcaccatcacagagcagggcttcatactcatg
acaaggagtgtccctgccggccctctgtccatccaggtccgtgctgtggacgcggtcagc
ggtcaggaggatgtggctgctgtgcaggtggaggtggcaccagagacgccaactactaca
gctatgccatctacgactgcagacacttcaacggccaccacagacatgtcaacggccacc
acagacatgtcaacagccaccacagacatgtcaacagccaccacagacatgtcaaccgcc
acctcagaagtcatgactagtagtgcctcccacataacttcacctgagagctcagagcca
acctctccacagagcacaacagagggccccagggtccaggctggtgcgtatcgcacggag
gacatggcggctctgggggcgtctctaggcgtcctgctcctcatctgcctgctcttcatc
accctcatggccgtccacatcaagaaccacaaaacagactggaaaaagctcaaggaagtc
agccatttccacaacaatctggccggggttgctccagggctgaagagtggagtgcagtac
tctaacgagggcttccagaacaccggcgactcgggcagcacacgcagctccagatactca
gatgaaccagatctgatgatggacaaggtcaagcccagtaaggcccgtgcagttgaggcg
ccggtcacccggtccgtggcgccccagcttgggatggtccttagcgacgccagcagcctg
gctgagagcagcacgagcgaggggggcaaggaggtgaagcccatcctcaccaaagagaga
aaagacgacgagggctacaaggccgtctggtttaaaacagacattgaccccaacgccaag
gaggaggtgaccatcatcccagaacgggctgagcaggacgacgatgacgacgttgatgat
gttaacgaagttgacgacgatgccgacgatgaagacaatgaagacaatgatgacgcgtct
gtgggtggttattacccacaaacgtctgacttgtaa
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