KEGG   Clupea harengus (Atlantic herring): 116220970
Entry
116220970         CDS       T09045                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03030  DNA replication
char03410  Base excision repair
char03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    116220970
   03410 Base excision repair
    116220970
   03420 Nucleotide excision repair
    116220970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:char03032]
    116220970
   03400 DNA repair and recombination proteins [BR:char03400]
    116220970
Enzymes [BR:char01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     116220970
DNA replication proteins [BR:char03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    116220970
DNA repair and recombination proteins [BR:char03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      116220970
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf_DPOE_2 zf-DPOE DNA_pol_B DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 116220970
NCBI-ProteinID: XP_031425753
Ensembl: ENSCHAG00000003048
UniProt: A0A6P8FB57
LinkDB
Position
7:26305386..26330108
AA seq 2240 aa
MAYFLVEGPLEQGITVVPSSPRRIKTSESLVPFHPRSGRCEDGSRFKVALPFKPYFYVAT
RKNCEREVISFLSKKFQGKVAKLEVCSKEDLDLPNHLVGLKRNYIKLSFNTVDDLMKVKR
ELSPAIRKNREKEKSNETYTSMLSSALVGGNIMTGEEDGPSKKMADQMDNLVDMREYDVP
YHVRLSIDLQIHVAHWYNVRFRGSAYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPD
AETDQIMMMSYMIDGQGFLITNKEIVSEDIADFEFTPKPEYEGPFTVFNEPDEAALIQRW
FEHIHETQPNIFVTYNGDFFDWPFVETRAAHHGLNMYREIGFQKDNQGEYKSSQAIHMDC
LRWVKRDSYLPVGSHNLKAAAKAKLSYDPVELDPEEMCRMATEQPQTLATYSVSDAVATY
YLYMKYVHPFIFALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEQEFNKM
TNDGHVMDTETYVGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTLRHAIEEEEN
IPLEQVTNFNEVCEEIKKKLVSLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVD
EATCAACDFNKPGANCQRKMAWQWRGEIMPASRSEFHRIQQQLESEKFPPFFPNGPPRAF
HSLDREEQARHEKKRLADYCRKAYKKVHVTKLETRITTICQRENSFYVDTVRAFRDRRYE
FKGLHKVWKKKLSQAQDRGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWY
SMEMAGIVCYTGANIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVLKSTNEKKPK
VTISYPGAMLNIMVKEGFTNHQYQELVDPANLTYETRAENSIFFEVDGPYLAMILPASKE
EGKKLKKRYAVFNEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVS
KVADYWLDVLYSKAANMPDTELFELISESRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQ
MVKDKGLSCRYVISRKPEGSPVTERAIPLAIFQAEPGVKKHFLRKWLKMPGLHDLDIRSI
LDWNYYIERLGSAIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIFKQKKISELF
TSEGKRQLPNVVQPGEANDMEDFGKPPRPLQPAILISTKRKRVSQGEDSQAESQELELTQ
SWREILGPPPSKEELLVWLRYHKKKWELQLRQRKERRKKRRLVDGDAQPGGGGVIRDGPT
TALGNFLRKTARSILDMPWQIIQVAETSHPGLFKLWAVIGSDLHCMKLTIPRVFYVNQRI
PKQDEGPTYKKVNRILPRSNVVCYLYQYTVPEDMYQEHINEINADLSAPDIEGVYETQVP
LLFRALVQLGCMCMVNKQAVRDLAGREADTFDLENLDMRSLAQFSYLEPGSVRHIYLYHH
SQGHKGLFGLFIPSQRKASVFVLDTVRSNQMPNLGNVYGTERAALLEKTSEELLPPEKHQ
FEVRAESDVKAIYRAVQRILLNYKEERRGPTLIAVQSNWELRRLAAGMGVLEEFPVVPVH
VPDEISYSVLDWQRHGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPHDVSIFGSDLF
LARHLRKHNHLLWLSPTARPDLGGKEADDSRLVMESDDRASVEINGQGCYSTVCVELDIQ
SLAVNTILQSQHVNDMEGGASMGVSFDVIQHSSLEDMMSGNQAANAVASYDETALCSNTF
RILKSMVVGWVREITQYNNVYADNQVMHFYRWLRSPSSLLYDPALHRTLNNMMKKIFLQL
VAEFKRLGSNVVYGNFNRLILCTKKRHIDDAIAYVEYITNSIHSREIFHSLSLTFSRCWE
FLLWMDPANHGGVKGKLPSSVLCGENGTGKKKKEKGDGSEEEGSEDEDDEDEVAGREGEG
GDGEDNVEDLIESSWNVMQYLPQTASCQKYFLMIISAYIAAVYHSMREELRRNAPGATPI
KRRGGSQASQQAAGDGSSLPGMISFSQEYISGELTQNFFTITQKIQKKVMGTRNMTLPSE
MFPVLPGSHLPLHNPALEFIKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSEDAQFR
DPCQSYVLPEVICHHCNFCRDLDLCKDPSMAQDGTVLPQWFCSNCQAQYDTDSIEMALVA
ALQKKLMSYTLQDLACTKCKGVKEANMPLYCRCAGDFSLTFSIKSFSEQIGVFRNIAAHY
KMGFLQETIDWLLLMTPQLA
NT seq 6723 nt   +upstreamnt  +downstreamnt
atggcttactttctggttgaagggccacttgagcagggcatcactgtggtcccctcatca
ccacgaagaataaagacaagtgagagcctcgtcccgttccatccccgttcaggtagatgc
gaggatggaagcaggtttaaggtcgccctcccatttaagccatacttctatgtcgctacc
agaaagaattgtgagagggaggtcatctcattcctttcaaagaagtttcaggggaaagtg
gcaaagctggaagtctgctccaaggaagacttggacctgccaaaccatctggtgggactg
aagagaaattatatcaagctgtcattcaacacggtagatgatcttatgaaggtcaaacgt
gagctctccccagctattcgcaagaaccgagaaaaagagaagtccaatgagacgtataca
agcatgctgtccagtgcattggttggaggaaacattatgaccggggaggaggatggaccg
tccaagaagatggcagatcagatggataatctagtggacatgagggaatatgatgtcccc
taccatgtccgcttgtccatcgacctgcaaatccatgtggctcactggtacaatgtccga
ttccgtggcagtgcctaccctcctgagatcgtgcgaagggacgaccttgtagagcgaccg
gatccagttgtgctggcttttgatatagagacgaccaaacttcctctcaagttccctgat
gcggagacagaccaaatcatgatgatgtcatacatgattgatggacagggctttctcatt
acaaacaaagaaatcgtctctgaggacattgcggattttgagttcacccctaaaccagag
tacgagggaccatttacagtgttcaatgagccagatgaagccgcgctcattcagcggtgg
tttgaacacatccatgagactcagcccaacatctttgtcacgtacaacggggacttcttc
gactggccctttgtggagacccgtgcagcccaccatggcctgaacatgtacagggagatt
ggctttcagaaggacaaccagggggaatacaagtccagccaggccatacacatggactgc
ctcaggtgggtcaagagagacagctacctgcccgtggggagccacaacctgaaggcggca
gcgaaggccaagctgagctatgacccagtggagctggacccagaggagatgtgccgcatg
gccaccgagcagccacagacactggcaacatactcggtgtcagacgccgtggccacatat
tacctgtacatgaagtacgtccacccgttcatcttcgccctgtgcaccatcattcctatg
gagcccgatgaggttttgcgtaaaggctctggaacgctgtgtgaggctctgctgatggtc
caggccttccatgccaacatcatcttccccaacaagcaggagcaggagttcaacaagatg
accaatgacggtcatgtcatggacactgagacctatgtgggaggtcatgtggaggccttg
gagtctggggtctttcgtagtgacatcccctgccgctttaaaatgaaccctgctgctttt
gacttcctccttcagagggttgagagaacccttcgtcacgctattgaggaagaggagaat
ataccactggagcaagtcaccaatttcaatgaggtgtgtgaggagatcaaaaagaagctg
gtctctttgaaagaggtgcccaacaggattgaatgtcctctcatctaccatcttgatgta
ggggccatgtaccccaacatcatcctgaccaatcgcctccagccgtctgccatggtggac
gaggccacctgtgccgcctgcgactttaacaaaccgggcgccaactgccagcggaagatg
gcctggcagtggagaggagagatcatgccagcgagccgcagtgagtttcatcgcatccag
cagcaactggagtctgagaagttccctcctttcttccccaacggccccccgcgggccttc
cacagcctggaccgagaggagcaggcccgccatgagaagaaacgtcttgcagattactgt
aggaaggcgtataagaaggtccacgtcaccaagctggagacgaggatcaccaccatctgc
cagagggagaactctttctatgtggacaccgtccgagccttcagagatcgccgctatgag
ttcaaaggcctacacaaggtgtggaagaagaagctgtcccaggcgcaggaccgcggggac
gccgctgaggtgaagcgctgcaagaacatggagatcctctacgagtccctgcagctggcc
cacaaatgcatcctcaactccttctacggctacgtcatgaggaaaggagcccgctggtac
tccatggaaatggcggggatcgtgtgctacactggagcgaacatcatcacccaggccaga
gagctcatcgaacagatcgggaggcctttggagttggatacggatgggatctggtgtgtt
ctgcctaactcctttcctgagaactttgtcctcaaatcaaccaatgagaagaaacccaag
gtcaccatctcctatcccggagctatgcttaacatcatggttaaggagggcttcaccaac
caccagtaccaggagctggtggacccggccaatctgacctatgagacgcgtgccgagaac
agcatcttctttgaggtagacgggccttacttggccatgatactgccggcctccaaagaa
gagggcaagaagctgaagaagaggtacgcagtgttcaatgaggacggctctctggctgag
ctgaagggctttgaggtgaagcgtaggggagagctgcagctcatcaagatcttccagtcc
tctgtgttcgaggccttcttgaagggcaccacgctggaggaggtctacgcctccgtgtcc
aaagtggccgactactggctggacgttctctacagcaaggcggccaacatgcccgacaca
gagctgtttgagctgatctccgagagccgctccatgtcccgtaagctggaggactacgga
gagcagaagtccacctccatcagcaccgccaagcgcctggccgagttcctgggcgaccag
atggtgaaggacaaggggctgagttgtcgttacgtgatctcacgcaaaccggaaggctcg
ccggtcactgagagagccataccgttggccatcttccaggcagaacctggagtcaaaaag
catttcctgcgcaaatggctgaagatgccaggtcttcacgacctggacattagatcgatc
ctcgactggaactactacatcgagcgcctgggcagcgccatccagaagatcatcaccatc
cccgcggccctccagcaggtgaagaacccggtgcccagggtgcgccacccggactggctg
cacaagaagctgctggagaagaacgacatcttcaagcagaagaagatcagcgagctcttc
accagcgaggggaagagacagctaccgaacgtggtccagcccggcgaggccaatgacatg
gaggactttgggaagcctccgcggcccctgcagccggccatcctcatcagcaccaagcgc
aagcgcgtctcccagggcgaggacagccaggccgagtcccaggagctggagctcacccag
tcctggagggagatcctgggcccgccgccctccaaggaggagctgctggtgtggctgcgc
taccacaagaagaagtgggagctgcagctgcggcagaggaaggagcgccgtaagaagcga
cggctcgtagatggcgatgcccagccaggagggggcggtgtgatccgggacgggccgacc
acagcgctgggcaacttcctccgcaagacggcgcgtagcatcctggacatgccctggcag
atcatacaggttgcagagaccagccacccaggcttgtttaagctgtgggcagtgatcggc
agtgacctgcactgcatgaagctcaccatccccagggtcttctatgtcaaccagaggatc
ccaaagcaggacgagggaccaacatacaaaaaggtcaaccgaatcctcccgcgctccaat
gtggtgtgctacctttaccagtacacggttccagaagacatgtaccaggagcacatcaac
gagatcaacgcagacctctctgctcccgacatcgagggcgtttatgagacccaggttcct
ctgctgttccgtgcgctggtgcagctcggctgtatgtgcatggtcaacaagcaggccgtg
cgggacctcgccggccgagaggccgacacctttgacctcgagaacctggacatgaggtcg
ctggctcagttcagctacctggaacctggcagtgtccggcacatctacctgtaccaccac
agtcagggacacaaggggttgttcggcctctttattccatcccagcgcaaggccagcgtg
tttgtgctcgacacggtgcgcagtaaccagatgcccaacctgggcaacgtgtacgggacg
gagcgcgccgccctgctggagaagaccagcgaggagctgctgcccccggagaagcaccag
ttcgaggtgcgggccgagagcgacgtgaaggccatctacagagccgtgcagcgcatactc
cttaactacaaggaggagcggcgtggccccactctgattgcggtgcagtccaactgggag
ctgcggcgtctggcggcgggcatgggggtgctggaggagttcccggtggtaccggtgcac
gtgcccgacgagatcagctacagcgtgctggactggcagcgccacggcgcccgccgcatg
atccgccactacctcaacctggacagctgtctctcgcaggcctttgacatggccaggtac
taccatctgcccgtgggcaacctgccacacgacgtgtccatcttcggctcggacctgttt
ctggcccgccacctgcgcaagcacaaccacctgctctggctctcgcccaccgcccggccc
gacctggggggcaaggaggcggacgacagccgcctggtgatggagagcgatgaccgggcc
tccgtggagatcaacggccagggctgctactccacagtgtgtgtggagctggacatccag
agtctggcggtcaacaccatcctgcagtcgcagcacgtcaacgacatggagggtggcgcc
agcatgggcgtgagcttcgacgtcatccagcactcctctctggaggacatgatgagtggc
aaccaagcagccaatgccgtggccagctacgacgagacggccctctgctccaacacgttc
aggatcctgaagagcatggttgtcggctgggtgcgagagatcacgcagtacaacaacgtt
tacgccgacaaccaggtgatgcacttctaccgctggctgcgatcgcccagctccctgctc
tatgacccagccctgcaccgcaccctgaacaacatgatgaagaagatcttcctgcaattg
gttgctgagttcaagcgtctgggctccaatgtagtctatgggaacttcaaccggctcatc
ctctgcaccaagaaacgtcacattgatgatgcaatcgcctatgtcgagtacatcactaac
agcatccactcacgggagatcttccactctctctcgctcaccttctcgcgctgctgggag
ttcctgctgtggatggatccagccaatcacggaggagtgaagggaaagctgccctcgagc
gtcctctgcggagagaacggcaccggcaagaagaaaaaggaaaagggcgatgggtctgaa
gaggagggcagtgaggacgaagatgacgaagacgaagtggctgggcgagagggggagggg
ggtgatggtgaagacaatgttgaggacctgattgagagcagctggaacgtcatgcagtat
cttccccaaacggcctcctgtcagaagtacttcctcatgatcatctccgcttatattgca
gctgtctatcacagcatgagggaggagctacggcggaacgctcccggggccactcccatt
aagaggcggggcggaagtcaggcttcccagcaggcagcaggagacggcagctccctccct
ggcatgatcagcttctctcaggagtacatctctggcgagctgacccagaacttcttcacc
atcacgcagaagatccagaagaaggtgatgggcacacggaacatgaccctgccctcggag
atgttccctgtgctgcccggctcccacctgcccctccacaaccccgccctggagttcatc
aaatacgtctgtcaggtgctgtcgttggatgcaaacatcgtgaaccaggtgaacaagctg
aagcgagacctgctgcggctggtggatgtgggcgagttctcggaggacgcccagttccgt
gacccgtgccaatcgtatgtcctgccggaggtcatctgccaccactgtaacttctgccgc
gaccttgacctctgcaaggacccgtccatggcacaggacggcacggttctgccccagtgg
ttctgctccaactgccaggcccagtacgacacggactccatagagatggcgctggtggcc
gcccttcagaagaagctgatgagctacaccctacaggacctggcgtgcactaaatgcaaa
ggggtgaaggaggccaacatgcctctgtactgccgttgcgctggcgatttcagcctcacg
ttctccatcaagagcttctccgagcagatcggagtgttccggaatatcgcggcccattac
aagatggggttcctgcaggagaccatcgactggctgctcctcatgactcctcagctggcc
tga

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