Clupea harengus (Atlantic herring): 116221146
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Entry
116221146 CDS
T09045
Name
(RefSeq) vacuolar protein-sorting-associated protein 36
KO
K12190
ESCRT-II complex subunit VPS36
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
116221146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
char04131
]
116221146
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
116221146
Membrane trafficking [BR:
char04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
116221146
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
116221146
Exosomal proteins of colorectal cancer cells
116221146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
Xre-like-HTH
BBL5
MA3
Motif
Other DBs
NCBI-GeneID:
116221146
NCBI-ProteinID:
XP_031426821
Ensembl:
ENSCHAG00000004181
UniProt:
A0A6P8FTL1
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All DBs
Position
7:complement(26363891..26365571)
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AA seq
382 aa
AA seq
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MDRFTWSNGLLEIHETLVIQQRGVRLYDGDEKAKLEVGIVMLTTHRLIWRDQKNHECCIS
IPLSQVIFFEEQAAGIGKSAKIVVHLHACPANKEPGPYQQSKFSYIKLSFKEHGQIEFYR
RLTEELTQKRWENTPASQPIPTATGSQAGRTRAVGIVGIERKLEEKRKETDKSISEAFED
LSKLMVKAKEMVELSRSIANKIKDKQGNITEDETIRFKSYLLSMGIADPVTRETHGSGTH
YHMQLAKQLGDMLQAPLEERGGMMALTEVYCLVNRARGMELLSPEDLVNACKMFESLKLP
LRLRVFDSGVMVVQLQSHSEEEMIASALDNVSDKGSLTAEEFAKLLGLSVLLAKERLLLA
EKMGNLCRDDSVEGLRFYPNLF
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggatcgttttacatggtctaacggtttattggaaattcatgaaacgttggtgattcag
caaagaggtgtcagactgtatgatggagatgaaaaggctaaactggaggttgggattgtc
atgctaactacccatcggctgatatggagggatcagaagaatcacgagtgctgcatttcc
atacctctctctcaggtaatcttcttcgaagaacaagcagctggcatcggaaagagtgca
aagatagtagttcatttgcacgcatgcccagccaacaaggagcctggtccataccagcag
agcaagttctcctatatcaagttgtctttcaaggagcacgggcagattgagttctacagg
agactgacagaggagttgacacagaagagatgggaaaacacaccagcctctcaacccatc
ccgacagcaacaggatctcaggcaggaagaactcgtgcagtcggaatagtaggcattgag
aggaaactggaagagaaacgcaaggaaacagacaagagcatttcggaggcatttgaggac
ctcagtaaactcatggtgaaagccaaagagatggtggaactgtcaagatccattgccaat
aaaatcaaggacaagcaagggaacatcacagaagacgaaaccatccgtttcaagtcctac
ctgctcagtatgggcatagctgaccctgtaactagggaaacccatggttcagggacacat
taccacatgcagctggcgaaacagctgggtgacatgctgcaggccccactggaagaacgt
ggaggtatgatggctctgacagaggtgtactgtctggttaaccgggccagagggatggag
ctgctgtctccagaggacttggtgaatgcctgtaagatgtttgagtcactgaaacttcct
ttgaggctgcgagtatttgacagcggtgtcatggtggtccagcttcagtcccatagtgaa
gaggagatgatcgcttcagctctggataatgtatctgacaagggttccttgaccgctgaa
gagtttgccaaacttttagggctgtctgttctgctagctaaggagagactgctgctggct
gaaaagatgggaaacttatgtcgggatgactcagtagagggcttgcgattttatccgaac
ttattttga
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