Clupea harengus (Atlantic herring): 116222407
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Entry
116222407 CDS
T09045
Symbol
exd1
Name
(RefSeq) piRNA biogenesis protein EXD1
KO
K18740
exonuclease 3'-5' domain-containing protein 1
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
116222407 (exd1)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
116222407 (exd1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
116222407
NCBI-ProteinID:
XP_031432118
Ensembl:
ENSCHAG00000012234
UniProt:
A0A6P8FW10
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Position
11:complement(24619008..24625367)
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AA seq
681 aa
AA seq
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MTSLEDYQFLQSLKGKRLKLKLNDETFIGVVQRILNKTVILEDVKAVKSGREHAVRHFHG
REILGVEFFSFRSTEHGIGNNVVAAAGEGHLTVAEYQPYKLDMLRDKEDDEYVNYVVINE
FHQKFLPAIMEIQRQKVIGVGADGIGGLYLERLCWLQITTKNRVFLFDMLALGALAFKNG
LTKIFSNDRILKVAHDCRRLAACLVALYGVKLMNVFDTQVADFLQFYRETGGLLPDRVST
MQEVVSLHLGMPASHLSSLNIKSRLSKEDREVWYMRPCPEPLLRLMALSVIHLLPLRLAL
LDALMLDYTSLVDAYLASVLFQPVQTQDIGQNSGLELSRELCELEQLQQERKAWAMDYYP
STTEGRLLRFVSRSNSSTSAAATSASSSHSHTSYGSNPTPAPPTDAPHNPTPPSGSPTPT
PTPYATPPIHTPTAQTPSHTPTPHAPTPGSDSTETPTPSPTPHITLPAHQAGNTPALNPI
LEPVPSYPSNPSRGTESPALNQSILSMTPRVLSIATPKNEASSTKVPKMEPLLKQCPKTF
PTESFASLSPPPRLIEVLMDTMAQSMPLTAEGTGQSGIGSYLNLGRGLQLQRAAFNNQVP
HTGVMPQSPTTKVAGSKGLVSSAPEADFPLKPMAAMAGVAQQIGSGNRSTAPPLGRATVL
QNGPVRPSALSLAFSSFRMTR
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgcttgaagactatcaatttttacagtctctgaaagggaagcgcctgaaatta
aagttgaatgatgaaactttcatcggtgtggttcagcgtatcctgaacaaaacagtcatc
ttggaggatgttaaggcagtcaaaagtggcagggaacacgctgtaagacattttcatggg
cgtgaaattttgggtgtggagtttttttcttttcgtagcacagaacatggaattgggaac
aatgtggtggcagccgctggagaagggcacctgaccgtggccgaatatcagccctataaa
ctggatatgttgcgagacaaagaagatgatgaatatgtcaactatgtggtcatcaatgaa
tttcatcagaaattcctcccagccataatggagattcagcggcagaaagtcattggggtg
ggagcagatggcattggaggactttatcttgagagactctgctggctccagattaccact
aagaacagggtcttcctctttgatatgttggcactcggagccctcgcctttaaaaatggt
ttgaccaagatcttttcaaatgatcgcatattgaaggttgcccacgactgtcgcagattg
gccgcttgcctggttgctctatatggtgtgaagctcatgaatgtatttgacacacaggta
gcggatttcctgcagttttacagagagacaggaggcctcctccccgaccgggtcagcacc
atgcaggaggtagtgagccttcacctggggatgcctgcctctcacctgtcctctctcaac
atcaagtctcgactctccaaggaggaccgtgaggtgtggtacatgcggccttgcccagag
ccgctcctgaggctcatggctctgtcggtcatccacttgctgcccctgcgcctggcgctg
ctggatgccctcatgttggactacaccagcctggtggatgcctacctggccagcgtcctc
ttccagcctgtgcaaacacaggacatcggccagaacagtggtctggagctctctcgagag
ctgtgtgagctggagcagctgcagcaggagcgtaaggcctgggccatggactactacccc
tccaccacagagggacggctgttgcgattcgtgtcccgctccaactccagtacctctgct
gcggccacgtctgcctcttcatcccactctcacacctcttacggctcaaatcctacccca
gcaccccccactgatgcccctcacaaccccacaccaccctctggtagtcccacacctacc
cctacaccctacgccacaccacctattcatacacccactgctcaaacgccatctcataca
ccaactcctcatgcacccactcctggttcagacagcactgaaacccccactccatccccc
acccctcacatcactttacccgcccatcaggctggtaacacaccagctcttaatcccatc
cttgaacctgtaccctcatacccttcaaacccaagccggggcaccgagtctccagcactt
aaccagtccatcttgtccatgacacctagagtcctttccatagcgacccccaagaatgaa
gcatcatccaccaaggtccccaaaatggagccattactcaaacagtgtcccaagacattt
cccacagagagctttgcgtctctctccccacctcctcgactcatcgaggtactcatggac
accatggctcagtcaatgccccttactgcagagggcactggtcagtccggcattggctcc
tacctcaacctgggcagaggcctacagctgcagagggctgcatttaacaaccaggtgccg
cacactggcgtgatgccacaaagccccaccaccaaagtggcagggtcaaagggtttggtc
tcctctgctccagaggctgacttccccttaaagcccatggcagccatggcaggggtggcc
cagcagattggcagtggtaaccgtagtacagcgccacctcttggcagagcaacagtgttg
cagaatggccctgttcgcccgtctgctctcagtctagcgttcagctccttcagaatgaca
agataa
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