Clupea harengus (Atlantic herring): 116222777
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Entry
116222777 CDS
T09045
Name
(RefSeq) integrin alpha-1
KO
K06480
integrin alpha 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04510
Focal adhesion
char04512
ECM-receptor interaction
char04810
Regulation of actin cytoskeleton
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116222777
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116222777
09142 Cell motility
04820 Cytoskeleton in muscle cells
116222777
04810 Regulation of actin cytoskeleton
116222777
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
char04147
]
116222777
04515 Cell adhesion molecules [BR:
char04515
]
116222777
04090 CD molecules [BR:
char04090
]
116222777
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
116222777
Cell adhesion molecules [BR:
char04515
]
Integrins
Integrin alpha subunits
116222777
CD molecules [BR:
char04090
]
Proteins
116222777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
FG-GAP
FG-GAP_3
VWA_2
Motif
Other DBs
NCBI-GeneID:
116222777
NCBI-ProteinID:
XP_031433316
UniProt:
A0A6P8GA05
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Position
12:25803768..25838185
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AA seq
655 aa
AA seq
DB search
MLYGMFYFGLTTLFVLLPTLTTFNVDEKNGLAFNGPIEDLFGYTVQQFENEEGKWVLIGS
PLWGQPANRTGQVYKCRVRKGMNTGCVMTSISADTTIPDIHEVKENMTMGTTLVSNPNGG
FLACGPQYGYMCGNQQFISGVCANVSSSFKVLNSIAPSVQACSKPLDIVIVLDGSNSIFP
WTSITDFLVRFLQNIDIGPTMSQVGIVSYGDNVGHEFNLSQFHNTNDALVHAKLIPQRTG
LRTMTAQGIEMARSEAFTVERGARLDAKKVMVIVTDGESHDNYMLKGVIDQCEEDGIERF
SIAVLGDYNRQNKSLEQVKTFIEEIESIASPPKGDHFFNVSDEVALLTIVDALEQRIFAL
EGTSDKNTSPLRMEYSQAGFSAHASKEALMLGAVGAFEWNGTVVMQQDGVTVEPDKATFH
NPLEERYEGMAGYVGYDVQSASTPDGILYITGAPRYNHTGRVTIYRFDGQNITVTQTLKG
QQIGSYFGSVLQTVDVDMDSYTDLLLVGSPMYMGSERDEQGQVYVFKLNKDGKFEPEMTL
KPEPQACANNIAIKNEPCGARFGTAIAAIPDLNLDGWADVVIGSPLENDHRGAVYIYHGN
KQKTLKEKYVQRIAAGGDGEKVKFFGQSIHGIMDLNEDGIIDVTIGGLGGASLYW
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgctttacggaatgttttattttggcttaacgacgctttttgtgctgctgcccacgcta
acgacgtttaacgtggacgaaaaaaacggattggcgttcaatggcccgattgaggacttg
ttcggctacaccgtgcagcagttcgagaacgaggaggggaagtgggttctgattggctcc
cccctttggggccaaccagccaataggacgggacaagtctacaagtgtcgggtgcgcaaa
ggcatgaatactgggtgtgttatgaccagcatatcagcggacacgacaatcccggacata
catgaagtcaaggaaaacatgactatgggaaccacgctggtctccaatcccaacggtgga
tttctggcttgtggtccgcagtatggctacatgtgtgggaaccagcagttcatctcaggg
gtctgtgcaaacgtcagctcctcattcaaggtgctaaactccatcgccccctcagtgcaa
gcgtgttcaaagccgctggacattgtgatcgtgctggacggctccaacagcatcttcccc
tggaccagcatcactgacttcctggtccggttcctgcagaacatcgacatcggtcccacg
atgtcccaggtgggcatagtgtcgtacggagacaacgttggacacgagttcaatctgagc
cagtttcacaacaccaacgacgccctggttcacgccaagctaataccacagaggacaggc
ctgaggaccatgacagcgcaaggcatcgaaatggcacggagcgaggccttcacagtggaa
agaggcgcccggctagacgccaagaaagtcatggtgatcgtcacagacggcgagtcacac
gacaactacatgctgaaaggggtcattgatcagtgtgaggaggacggcatcgagaggttc
tccatcgccgtcctcggtgactacaaccggcaaaacaaaagcctcgagcaggtgaagacg
ttcatcgaggagatcgagtcgatcgccagccctcccaagggcgaccacttcttcaacgtg
tccgacgaggtggccctgctgaccatcgtggacgctctcgaacagcgcatcttcgcgctg
gaaggtacgtcagacaaaaacacatctcctcttcgaatggagtattcccaggctgggttc
agtgcccacgcgtctaaagaggccttgatgctcggggcggtgggagccttcgaatggaac
ggcacggtggtcatgcagcaagatggggtcaccgtggagcccgacaaggccaccttccac
aaccccctggaggaaagatacgagggcatggcaggctatgtgggttacgacgtgcaatca
gcctcaacgcccgacggcatcctctacatcaccggtgccccgcgatacaaccacaccggc
cgcgtgaccatctaccgcttcgacggacaaaacatcaccgtcacacaaaccctgaaggga
cagcagatcggttcctactttggcagcgtgctgcagacggtggatgtggacatggactcc
tacacagacctgctcctggtcgggtcccccatgtacatgggctccgagagggacgagcaa
ggtcaggtgtacgtcttcaaactgaacaaggacggcaagtttgagccggagatgaccctg
aagcccgagccccaggcctgcgccaacaacatcgccatcaagaacgagccctgcggcgcc
cgcttcggcacggccatagccgccatcccagacctcaacctggacggctgggcggacgtg
gtgatcggctcgccgctggagaacgaccacagaggggcggtgtacatctaccatggcaac
aagcagaagactctcaaagagaagtatgtgcagcgcatcgctgctggaggggatggtgaa
aaagtgaagttttttggtcagtccatccacggaatcatggatttgaatgaagatggcatc
attgacgtcaccatcggaggtctgggtggagcatctctttactggtga
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