Clupea harengus (Atlantic herring): 116222779
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Entry
116222779 CDS
T09045
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116222779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
116222779
03041 Spliceosome [BR:
char03041
]
116222779
03009 Ribosome biogenesis [BR:
char03009
]
116222779
03016 Transfer RNA biogenesis [BR:
char03016
]
116222779
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116222779
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
116222779
Spliceosome [BR:
char03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116222779
Complex C
U4/U6.U5 tri-SnRNP related factors
116222779
Ribosome biogenesis [BR:
char03009
]
Eukaryotic type
Pre-60S particles
Helicases
116222779
Transfer RNA biogenesis [BR:
char03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
116222779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
MTR4-like_stalk
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
INO80F
Motif
Other DBs
NCBI-GeneID:
116222779
NCBI-ProteinID:
XP_031433324
UniProt:
A0A6P8G2H5
LinkDB
All DBs
Position
12:complement(25841148..25856704)
Genome browser
AA seq
689 aa
AA seq
DB search
MADAFGDDLFSVFDDEQTASSKAKPAPPAGKTAGKHGKGKTESPLITKSKREADNDGTDE
VVFGKKPKLETVSPEEINLADLMPQVKTEQVETVEGCTHEVALPSNEDYKQLKPRVGKAA
KEYPFLLDPFQREALLCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKA
LSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVVFDE
IHYMRDLERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRP
TPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDSGGSAGGGKWDAKGRRGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLEFNTDEEKKLVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMKK
LEEQYNAIEIPNEESVVTYYKIRQQLAKLAKEIEEFVRKPKYCLPFLQPGRLVKVKNEEA
DYGWGVVVNFSKKSNVKVFCPSNICQHDT
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggggacgatttgttcagcgtgtttgatgatgagcaaacggcttct
tctaaagctaaaccagcaccaccggctgggaaaactgctggtaaacatggaaagggaaag
acagaatcgccccttattaccaagagtaaacgagaagctgacaacgatggcacagatgaa
gttgtgtttgggaagaaacccaagctcgaaaccgtatcgcctgaagaaatcaacctcgca
gatctcatgcctcaggtgaaaacggagcaagtggaaacggtggaaggctgcacgcatgag
gttgctctgccatccaatgaagactacaaacagttgaaacctcgagttgggaaagcagcg
aaagaatacccattcctactggaccccttccagagagaagcccttttgtgcatcgacaac
aaccagtctgttctggtgtcagcccacacatctgctggcaagactgtctgtgcagaatat
gccattgctctggccctgagggagaagcagagggtgatcttcaccagccccatcaaagcc
ctgagtaaccagaagtacagagagatgtacgaggagttccaggatgtgggactgatgacg
ggagacgtcaccatcaaccccacggcctcctgcctcgtcatgaccactgagatcttgcgg
agtatgctgtacagaggctcagaggtgatgcgagaggtggcctgggtcgtctttgatgag
atccattacatgagggatttggagcgtggagtggtctgggaggagacgatcatcctgctg
ccagacaacgtccactacgtcttcctctccgccaccatccccaacgcccgacagtttgcc
gagtggatctgtcacctccataaacagccctgccatgtggtgtacacagactaccgcccc
actcccctgcaacactacatcttcccagcagggggcgacggacttcacctcgtggtggat
gagaatggtgagttcagagaggacaacttcaacacggccatgcaggtcctccgggacgcc
ggggattctgggggcagtgccggcgggggcaagtgggacgccaagggcaggaggggggga
acgaaaggtccgtccaacgtgtttaagatcgtgaagatgatcatggagaggaacttccag
cccgtcatcatcttcagcttcagcaaaaaggagtgcgaggcctacgccctacaggtgtcc
aagctggagttcaacacagacgaggagaagaaacttgtggaggaggtcttcaacaatgcc
atcgactgtctctcggacgaggacaaaaagcttccacaggtggagcacgtcctccccctg
ctgaagagaggcatcggtatccatcatggtggcctcctacccatcctgaaggaaaccatc
gagatcctcttttctgaagggcttatcaaggctctgttcgccacggaaacgttcgccatg
gggatcaacatgcctgctcgcaccgtgctcttcaccagcgcccgcaagtttgatggcaaa
gacttccgctggatcacctcgggtgagtacatccagatgtccgggcgagcgggccggaga
ggcatggacgagaggggcatcgtcatcttcatggtggacgagaagatgagccctgctgtg
ggcaagcagctcctcaagggctcggccgaccctctgaacagcgctttccacctgacctac
aacatggtgctgaacctcctgcgggtggaggagatcaacccggagtacatgctggagaag
tccttctaccagttccagcactacagggcggtgcccggcgtggtcgagaagatgaagaag
ctggaggaacagtacaacgccattgaaatcccaaacgaggagagcgtggtcacctactac
aagatccgccagcagctggccaagctggccaaggagatcgaggagttcgtccgcaagccc
aagtactgcctgcccttcctccagccggggaggctagtcaaggtgaagaacgaggaagct
gattacggctggggagtggtcgtgaacttctccaagaagtcaaacgtcaaggtattttgt
ccgtcaaatatttgccaacatgacacatga
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