KEGG   Clupea harengus (Atlantic herring): 116222854
Entry
116222854         CDS       T09045                                 
Name
(RefSeq) vimentin-like
  KO
K07606  vimentin
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:char00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    116222854
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    116222854
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:char04812]
    116222854
   04147 Exosome [BR:char04147]
    116222854
Messenger RNA biogenesis [BR:char03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     116222854
Cytoskeleton proteins [BR:char04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     116222854
Exosome [BR:char04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   116222854
  Exosomal proteins of other cancer cells
   116222854
SSDB
Motif
Pfam: Filament FPP DUF1664 DUF7491 DUF3450 Tropomyosin MscS_porin Gp58 WXG100 SlyX ApoLp-III Spc7 CENP-F_leu_zip ATG16 DivIC Prefoldin Prominin Baculo_PEP_C FlaC_arch Phage_GP20 Laminin_II DUF4407 ATG17_like PUMA_CC Spike_torovirin TSC22 BLOC1_2 DUF2730 Fez1
Other DBs
NCBI-GeneID: 116222854
NCBI-ProteinID: XP_042565376
UniProt: A0A8M1KMU0
LinkDB
Position
12:complement(2700335..2703265)
AA seq 392 aa
MRGSSHSQKSLSVSNSSSVRVQSPSPSRCKGSSYSRGRNGYQGGVSAVEVGTEIHQQHAN
EKEEMHEVNVRFAGYIGKVQALELRNAQLQAELAALQGRFKGGPGGLGEEYELKFKEMRD
LIEALTAQKGAADIERGYIKEEIDVWRLKLEEEMALKEAAEMILLEFRQDVDNATLQKAD
LERCVEQLLAEIELLKKLHDEEVAYLMQQIEDSKVTVELDSDRPDLAAYLRNMRAEIEAV
AARNVQEAEKWYKGKFDTLKQTAGKHEDQMKTMKDEITTFHNQVTELQNQIDGLRASNSA
LEQQLEDMEANHQDKVAGLEDIIDQLENQLCETKMEMSKYMQDYQELLHIKLKLDAEIAT
YRKLLESEEKRLGISTEGKAPILNYIQHYCLA
NT seq 1179 nt   +upstreamnt  +downstreamnt
atgagaggctcctcacactcccagaagtccctatcggtgagcaactccagcagtgtgcgg
gtgcaaagtccatctccttcccgctgtaagggatcctcctacagccgcggtcgtaatggg
taccagggtggtgtctctgctgttgaggttggcacagagatccaccagcagcatgcaaac
gagaaggaggaaatgcatgaagtgaatgtacgctttgccggttacattgggaaggtgcag
gccctggaactgaggaatgcccagctgcaggcagagctggccgcactgcagggccgcttc
aagggaggtcctggtgggctcggagaagagtatgagctcaagttcaaggagatgagggat
ctgattgaggccctgactgcacaaaagggcgcagctgacattgagaggggttacatcaag
gaggagatagacgtgtggaggctcaaactggaggaggagatggccctcaaagaggcagct
gagatgatcctgctagagttccgtcaggatgtggataatgccacgctgcagaaagccgac
ctggagaggtgtgtggaacagctgctggccgagattgagttattgaagaagctgcatgat
gaagaggtggcttatctcatgcagcagattgaggattccaaggtcactgtggagctggac
tcagaccggcctgacctggcggcctacctgcgcaacatgcgtgctgagattgaggcagtg
gctgctcgcaatgtccaggaggcagagaagtggtacaagggcaaattcgacacactgaaa
caaacagccggcaaacatgaggaccagatgaagaccatgaaggacgagatcaccaccttc
cacaatcaagtgactgaactgcagaatcagattgatggcctgagagccagtaattctgct
ctggaacagcagctggaagacatggaggcaaatcaccaagacaaggtggcaggactggag
gacatcattgatcaactggagaaccagctctgtgagaccaagatggagatgagcaaatac
atgcaggactatcaagagctgctacacatcaagctgaagctcgatgctgagatcgccacc
tacaggaagctgctggaaagcgaagagaagagactgggaatctctacagaaggtaaggca
cccatacttaactacatccaacattactgtttggcatag

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