Clupea harengus (Atlantic herring): 116222857
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Entry
116222857 CDS
T09045
Name
(RefSeq) vimentin-like
KO
K07606
vimentin
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116222857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
116222857
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
char04812
]
116222857
04147 Exosome [BR:
char04147
]
116222857
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
116222857
Cytoskeleton proteins [BR:
char04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
116222857
Exosome [BR:
char04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
116222857
Exosomal proteins of other cancer cells
116222857
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
FPP
DUF1664
MscS_porin
Tropomyosin
EzrA
SlyX
DUF3450
Spc7
Sec10_N
Laminin_II
WXG100
CENP-F_leu_zip
Baculo_PEP_C
Crescentin
DUF7310
DivIC
OVT1
Prefoldin
DUF4407
ApoLp-III
ATG17_like
DUF3141
TPR_MLP1_2
Lip_prot_lig_C
FlaC_arch
Motif
Other DBs
NCBI-GeneID:
116222857
NCBI-ProteinID:
XP_031433733
UniProt:
A0A6P8G150
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All DBs
Position
12:complement(2768359..2770152)
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AA seq
383 aa
AA seq
DB search
MRGSSHSQKSLSVINSSSVRVQSPSPSRCKGSSYSRGRNGYQGGVSAVEVGTEIHQQHAN
EKEEMHEVNVRFAGYIGKVQALELRNAQLQAELAALQGRFKGGPSGLGEEYEIKFKEVRD
LIEALTAQKGAADIERGYIEEEIDVWRLKLEEEMALKEAAEMILQEFRQDVDNATLQKAD
LERQVEQLLAEIEFLKKLHDEEVADLMKQIEDSKVTVELDSDRPDLAAYLRNMRAEIESV
AARNVQEAEKWYKGKFDTLKQTAGKTEEKMKTMKDEITTFHSQVTELQNQIDGVRARNSA
LEQQLEDMEANHQDKVAGLEDIIDQLENQLCETKMEMSKYMQDYQELLHIKLKLDAEIAT
YRKLLEGEEKRLGIATEGKSTHT
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgagaggctcctcacactcccagaagtccctgtcggtgatcaactccagcagtgtgcgg
gtccaaagtccatctccttcccgctgtaagggatcctcctacagccgcggtcgtaatggg
taccagggtggtgtgtctgctgttgaggttggcacagagatccaccagcagcatgcaaac
gagaaggaggaaatgcatgaggtgaatgttcgctttgccggttacattgggaaggtgcag
gccctggaactgaggaatgcccagctgcaggcagagctggccgcactgcagggccgcttc
aagggaggccctagtgggctcggagaagagtatgagatcaaattcaaggaggtgagggat
ctgattgaggccctgactgcacaaaagggcgcagctgacattgagaggggttacatcgag
gaggagatagacgtgtggaggctcaaactggaggaggagatggccctcaaagaggctgct
gagatgatcctgcaagagttccgtcaggatgtggataatgccacgctgcagaaagccgac
ctggagaggcaagtggaacagctgctggctgaaattgagtttttgaagaagctgcatgat
gaagaggttgctgacctcatgaagcagattgaggattccaaggtcactgtggagctggac
tcagaccggcctgacctggcggcctacctgcgcaacatgcgtgctgagattgagtccgtg
gctgctcgcaatgtccaggaggcagagaagtggtacaagggcaaattcgacacactgaaa
caaacagctggcaaaactgaggaaaagatgaagaccatgaaggacgagatcaccaccttc
cacagtcaggtgactgaactgcagaatcagattgatggcgtgagagctcgcaattctgct
ctggaacagcagctggaagacatggaggcaaatcaccaagacaaggtggcagggctggag
gacatcattgatcaactggagaaccagctctgtgagaccaagatggagatgagcaaatac
atgcaggactatcaagagctgctgcacatcaagctgaagctcgatgctgagatcgccacc
tacaggaaactgctggaaggcgaggagaagagactgggaatcgctacagaaggtaaaagc
acccatacttaa
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