KEGG   Clupea harengus (Atlantic herring): 116222857
Entry
116222857         CDS       T09045                                 
Name
(RefSeq) vimentin-like
  KO
K07606  vimentin
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:char00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    116222857
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    116222857
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:char04812]
    116222857
   04147 Exosome [BR:char04147]
    116222857
Messenger RNA biogenesis [BR:char03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     116222857
Cytoskeleton proteins [BR:char04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     116222857
Exosome [BR:char04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   116222857
  Exosomal proteins of other cancer cells
   116222857
SSDB
Motif
Pfam: Filament FPP DUF1664 MscS_porin Tropomyosin EzrA SlyX DUF3450 Spc7 Sec10_N Laminin_II WXG100 CENP-F_leu_zip Baculo_PEP_C Crescentin DUF7310 DivIC OVT1 Prefoldin DUF4407 ApoLp-III ATG17_like DUF3141 TPR_MLP1_2 Lip_prot_lig_C FlaC_arch
Other DBs
NCBI-GeneID: 116222857
NCBI-ProteinID: XP_031433733
UniProt: A0A6P8G150
LinkDB
Position
12:complement(2768359..2770152)
AA seq 383 aa
MRGSSHSQKSLSVINSSSVRVQSPSPSRCKGSSYSRGRNGYQGGVSAVEVGTEIHQQHAN
EKEEMHEVNVRFAGYIGKVQALELRNAQLQAELAALQGRFKGGPSGLGEEYEIKFKEVRD
LIEALTAQKGAADIERGYIEEEIDVWRLKLEEEMALKEAAEMILQEFRQDVDNATLQKAD
LERQVEQLLAEIEFLKKLHDEEVADLMKQIEDSKVTVELDSDRPDLAAYLRNMRAEIESV
AARNVQEAEKWYKGKFDTLKQTAGKTEEKMKTMKDEITTFHSQVTELQNQIDGVRARNSA
LEQQLEDMEANHQDKVAGLEDIIDQLENQLCETKMEMSKYMQDYQELLHIKLKLDAEIAT
YRKLLEGEEKRLGIATEGKSTHT
NT seq 1152 nt   +upstreamnt  +downstreamnt
atgagaggctcctcacactcccagaagtccctgtcggtgatcaactccagcagtgtgcgg
gtccaaagtccatctccttcccgctgtaagggatcctcctacagccgcggtcgtaatggg
taccagggtggtgtgtctgctgttgaggttggcacagagatccaccagcagcatgcaaac
gagaaggaggaaatgcatgaggtgaatgttcgctttgccggttacattgggaaggtgcag
gccctggaactgaggaatgcccagctgcaggcagagctggccgcactgcagggccgcttc
aagggaggccctagtgggctcggagaagagtatgagatcaaattcaaggaggtgagggat
ctgattgaggccctgactgcacaaaagggcgcagctgacattgagaggggttacatcgag
gaggagatagacgtgtggaggctcaaactggaggaggagatggccctcaaagaggctgct
gagatgatcctgcaagagttccgtcaggatgtggataatgccacgctgcagaaagccgac
ctggagaggcaagtggaacagctgctggctgaaattgagtttttgaagaagctgcatgat
gaagaggttgctgacctcatgaagcagattgaggattccaaggtcactgtggagctggac
tcagaccggcctgacctggcggcctacctgcgcaacatgcgtgctgagattgagtccgtg
gctgctcgcaatgtccaggaggcagagaagtggtacaagggcaaattcgacacactgaaa
caaacagctggcaaaactgaggaaaagatgaagaccatgaaggacgagatcaccaccttc
cacagtcaggtgactgaactgcagaatcagattgatggcgtgagagctcgcaattctgct
ctggaacagcagctggaagacatggaggcaaatcaccaagacaaggtggcagggctggag
gacatcattgatcaactggagaaccagctctgtgagaccaagatggagatgagcaaatac
atgcaggactatcaagagctgctgcacatcaagctgaagctcgatgctgagatcgccacc
tacaggaaactgctggaaggcgaggagaagagactgggaatcgctacagaaggtaaaagc
acccatacttaa

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