Clupea harengus (Atlantic herring): 116222918
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Entry
116222918 CDS
T09045
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX4
KO
K13982
probable ATP-dependent RNA helicase DDX4 [EC:
5.6.2.7
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
char03036
]
116222918
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116222918
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116222918
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
116222918
NCBI-ProteinID:
XP_031434022
UniProt:
A0A6P8GEV8
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Position
12:26767017..26778020
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AA seq
566 aa
AA seq
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MDDWEEKDAGATSTTSSFASGGNSWNSGGQKNSFSKNDNEGSSWNSGGGGFGERGGSRGR
GGGGGGFSRSFSSGGDENGNKEDGDGSSWNGGGRGGFRGRGGGGSRGGFRDSNNSDNAEN
GNDGEFRSDFGRGRGRGRGGSGGFRQEGGGEDGFQGSGGFMGRDEEFVPKGKRDNESGGD
GENAGPKVIYVPPPTPEGDDAVFAKFQTGINFDKYDDILVDVSGSNPPPAIMTFVEASLC
ESLSKNISKSGYVKPTPVQKYGIPIIMAGRDLMACAQTGSGKTAAFLLPILQTLMRDGVA
ASQFSEQQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGISTGYTIREVLKGC
NVLCGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPPKEERQ
TLMFSATYPEEIQRLAADFLKVDYLFLAVGVVGGACSDVEQLIMEVNQFSKRDQLLEILK
TTGNERTMVFVETKRKADFIATFLCQEKLPTTSIHGDREQREREQALCDFRTGKCPVLVA
TSSLARGLDIEHVQHVVNFDLPNNID
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggatgactgggaagaaaaggatgcaggcgctactagcactacctcaagttttgccagt
ggaggaaactcgtggaacagtggagggcagaaaaacagcttctccaaaaacgacaatgag
ggaagttcctggaacagtggaggaggaggatttggggaaagaggtggaagcagaggccgt
ggcggcggaggaggcggattcagccgttcattttcctcaggaggtgatgaaaacggaaat
aaggaagatggtgatggcagctcctggaatggtgggggcagaggggggtttcgaggcaga
ggtggaggaggctcaagaggaggatttagagattcaaataactctgataacgctgaaaat
ggaaatgacggtgaattcagaagtgactttggaagaggaagaggacgtggcagagggggc
agtggtggcttccggcaagagggaggaggtgaagacggattccaggggagtggaggtttc
atgggaagagatgaggaattcgttcccaaaggaaaaagggacaatgaaagtggaggtgat
ggagaaaatgccggtccgaaggtgatctatgttcctcccccaaccccggaaggggacgat
gctgtctttgctaagttccagacaggcattaattttgataagtatgatgacatcttagtg
gatgtgagtggaagcaacccgccgccagccatcatgacctttgtagaagcaagcctgtgc
gagtcgctgagcaaaaacatcagcaagtcaggttatgtgaaacccacgccagtgcagaag
tatggcatccccatcatcatggcaggcagggacctcatggcctgcgcccagactggatca
ggaaaaaccgctgccttcctgttgcccatcctgcagacgctgatgagagacggggtggca
gctagccagttcagcgagcagcaggagcctgaggccatcatcgtggcccctacccgagag
ctcatcaatcagatctacctggaggcgcgcaagtttgcctacgggacgtgtgtgcgcccg
gtggtggtgtatggaggcatcagcactgggtacaccatcagggaggtcctgaagggctgc
aacgtgctctgtggaactccaggaagactgctggacatcatcggaagaggaaaggttgga
ttgagtaaattgcgttacctggtgctggacgaggcggaccgcatgctggacatgggcttt
gagccggacatgcgcaggctggtgggctctcccgggatgcccccgaaagaggagaggcag
actctgatgttcagcgccacttatccggaggagatccagaggctggctgcagacttcctg
aaggttgattacttgtttctggctgtgggtgtggttggaggagcctgtagtgatgtcgag
cagctgatcatggaggtgaaccagttctccaagagggaccagctgttggagatactgaag
actacaggaaatgagcgtacaatggtgtttgtggaaaccaaacgcaaggcagatttcatc
gccacgtttctctgtcaggagaagttgcccacaactagcatccatggagaccgtgagcag
cgggagagggagcaggctctctgtgacttccgcactgggaagtgtcctgtcctggtggcc
acgtcctcgcttgccaggggcttggacattgagcatgtgcaacacgttgtgaactttgac
ctccccaacaacatcgattga
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