Clupea harengus (Atlantic herring): 116224733
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Entry
116224733 CDS
T09045
Symbol
ptch1
Name
(RefSeq) LOW QUALITY PROTEIN: protein patched homolog 1
KO
K06225
patched 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
116224733 (ptch1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
MMPL
Motif
Other DBs
NCBI-GeneID:
116224733
NCBI-ProteinID:
XP_031441365
Ensembl:
ENSCHAG00000017167
UniProt:
A0A6P8H2G4
LinkDB
All DBs
Position
18:4846518..4894897
Genome browser
AA seq
1551 aa
AA seq
DB search
MASAVNVSSEQENRDPDRPRLTRRNRGIYHTTALDLEYLQRPSYCDAAFALEQISQGKAT
GRKAPLWLRAKFQRLLFKLGCYIQQNCGKFLVVGLLIFGAFAVGLRAANLETNVEKLWVE
DGGRVNEELKYTRQKIGEEAMFNPQLMIQTPREGGANVLTVEALRQHLDSALKASRVQVY
MYNRQWNLEDLCYKSGEMVTETNFLNQFIDKLHPCLIITPLDCFWEGAKLQSGMVYLLGK
LKPIQWTNFDPMEFLADLKSMNFQVDTWEEMLAKAGVGRGYMDRPCLNPKDPDCPLSAPN
KNDTQALNLDIGHILAGGCHGISKNYMHWQEELIVGGTIKNGSRKLQSAQALQTMFQLMT
PKQMYEHLKNDHDVVVLNWNEDKAAAILEAWQRRYSEAVQQSVPVNSSQKVLTFTTTTLE
DILKSFSDVSVIRIASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVTLSVAAGLGLC
SLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASV
ALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRF
DIFCCFVSPCANRVIQIEPQAYVDGSDGSRYSPPPCSFGSVPPSYSSHGFSQQTQITMRS
TVQLRTEYDPRTQAYYTTAEPHSQIHVQPFTPGPAPAPPPTNTNTNTSANHNYNNSSAAN
RAASASVSSSGIGTNVPTTPGGAPPSSHATPSQPPSFPSTPCQSPANGSSTRDLLSNFTE
VAGSRGHVHSCPEPPCWRWSFASFAERHYAPFLLQPTTKVVVIILFLGLLGVSLYGTTCV
RDGLELTDIVPRETSEYDFLGAQFKYFSFYYMYVVTQRADYARLQGLLYELHSRFESVKY
VLREDDGRLPRMWLHLFRDWLKGLQQAFDREWESGRITRTNFRNGSDDGILAYKLLVQTG
RRDKPINYNQLTRQRLVDADGIINPNCFYIYLSAWVSNDPVAYAASQANIRPHPPEWLHD
RTDSLPNTRLSIPAAEPIEYAQFPFYLNGLRETAQFVEAIESVRAICSNYSRQGLPSYPN
GYPFLFWEQYVSLRHWLLLSISVVLACVFLVCAVFLLNPWTAGIIVLVLALMTVELFGMM
GLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDRNKRAILALEHMFAPVLDGAF
STLLGVLMLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLLPVLLSYFGPYPEVSARACRP
WNGRSQLPTPHPSRPRQVVPLCRAPPPHHHHGHRSDSSDSEYGSNTTVSGISQELQQYDL
RPSRGKPSARPEEVRPGPLGRQSTHQVDLPAYPVPSALHSDPRQPQPYRSGHAPHPQEAA
APPHLARRYSSKDPKRDQSGGHQHQQYRRQPAPPPPSQPHRYPEGPTGHSRERSAGQQQH
HRSAAHHQHHPHPSSNPAYGQPITTVTASASVTVAVHSPATPSPSPCPTATPVSLQETYS
DSSSSGGSPSFQDPHVPSRDSVRHRRSHLEGMDFKDMEYDAPSGRIGTASS
NT seq
4656 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctgttaatgtctcctctgagcaggaaaacagggaccccgatcggccgagg
ttaacacgaagaaatagggggatctaccatacaactgcattggatttggaatatttgcaa
cgaccgagttactgtgatgcagcttttgcgttggagcaaatatcccaggggaaggcgact
ggaagaaaagcaccgctgtggctgagagcaaagtttcagagacttttgtttaaactgggg
tgttacatacaacagaactgtggaaagtttttagttgtcggcctcttaatatttggagct
ttcgctgttggcttgagggcagctaatctagaaaccaatgtggagaaactttgggtagaa
gatgggggcagggtgaacgaggagctgaagtacacgcggcagaagattggggaggaggcc
atgttcaaccctcagctcatgatccagacgccgcgggagggaggcgccaacgtcctgacg
gtggaggcgctgaggcagcacctggactctgctctcaaggctagcagggtgcaggtttac
atgtacaacaggcaatggaatttagaggatttgtgctacaagtcaggagaaatggtaacc
gaaaccaattttcttaatcagtttatcgacaaacttcacccctgcctcatcatcacacca
ctggattgcttctgggaaggagcgaagctgcagtcgggcatggtgtatctcctcgggaag
ctgaaacccattcagtggaccaacttcgaccccatggagttcctggcagacctgaagtcc
atgaactttcaagtggacacctgggaggagatgctggccaaggccggcgtgggccgcggc
tacatggacagaccgtgcctgaaccccaaagaccccgactgtcccctctcagctcccaac
aagaacgacacacaggccctcaacctcgacattggccacattctcgcaggtgggtgtcat
ggcatctccaagaactacatgcactggcaagaggagctcatcgttggagggaccatcaag
aacggaagtagaaagcttcaaagtgcccaagccctgcagaccatgtttcagctgatgacc
cccaagcagatgtacgaacacttgaagaacgaccacgacgtcgtggtcctgaactggaat
gaggacaaggcagcagccatcttggaagcctggcaaaggagatactctgaggctgtgcaa
cagagtgtccccgtcaactcgtcccagaaagtgctcacgttcaccaccaccaccctcgag
gacatcctcaagtccttctcagatgtcagcgtcatccgcatagccagcggctacctgctc
atgctggcctatgcctgtctgaccatgctgcgctgggactgcgccaagtcccagggtgct
gtggggctggcgggcgtcctcctcgtcaccctgtcagtggcagcaggactgggcctgtgc
tctctgatcgggatctccttcaacgccgctaccactcaggtgttgccatttctggctctg
ggcgtgggtgtggatgatgtgttcctcctggcccatgccttcagtgagacggggcagaat
aagaggatccctttcgaggaccgcaccggcgagtgcctgaagaggacgggcgccagcgtg
gctctcacctccatcagcaacgtcaccgccttcttcatggccgccctcatccccatccca
gctctccgcgccttctctctacaggctgcggtggtggtggtgtttaactttgccatggtg
ctactgatcttccccgccatcctcagcatggacctgtaccgccgagaggaccggcgcttt
gacatcttctgctgcttcgtcagtccgtgtgccaaccgggtgatccagatcgagccccag
gcctacgtggacggctcggacggcagccgctacagcccgccgccgtgctcgtttggcagc
gtgcctccgtcctacagcagccacggcttctcccagcagacgcagatcaccatgcgctcc
accgtgcagctgcgcaccgagtacgacccgcgcacgcaggcctactacaccacggccgag
ccacactcgcagatccacgtgcagcccttcaccccaggacccgcacccgcacccccaccc
accaacaccaacaccaacaccagcgccaaccataactacaacaacagcagcgctgccaac
cgggcagccagcgccagcgtcagcagcagcggcatcggcaccaacgtccccaccacaccc
ggcggggcgcccccctcctcccacgccacgccctcccagccgccctcgttcccctccacg
ccctgccagagcccggcgaacggcagctccacgcgggacttgctctccaacttcacggag
gtggcgggcagcagggggcatgtgcactcctgccccgagccgccctgctggcgatggagc
ttcgcctcgttcgccgagaggcactacgcccccttcctgctgcagcccactactaaggtg
gtggtgatcatcctgttcctgggcctgctgggcgtgagcctgtacggcaccacgtgtgtc
cgcgacggactggagctcaccgacatcgtgccgcgcgagaccagcgagtacgacttcctg
ggcgcgcagttcaagtacttctccttctactacatgtacgtggtgacgcagcgggccgac
tacgcccgcttgcaggggctcctctacgagctgcatagccgcttcgagtcggtcaagtac
gtgctgcgcgaggacgacgggcggctgccgcgcatgtggctgcacctgttccgtgattgg
ctgaaaggtctacagcaggcgttcgatcgggagtgggagtcgggccgaatcacgcggaca
aacttcaggaacggctcagacgacggaatcctggcctacaaactgctggtgcagacagga
aggagagacaaacccatcaactacaaccagctgacgcgacagcggctggtggacgcggac
ggcatcatcaaccccaactgcttctacatctacctgtccgcctgggtcagcaacgacccg
gtggcctacgccgcctcccaggccaacatccgcccgcaccccccggagtggctccacgac
aggaccgactccctccccaacacccggctcagcattcccgccgctgaacctatcgaatat
gcacagtttccgttctacctcaacggcctccgagagacggcgcagtttgtggaagccatc
gagagcgtccgggccatctgcagcaactacagccgccaggggctccccagctaccccaat
ggctacccgttccttttctgggagcagtacgtcagcctgcgccactggctcctgctctcc
atcagcgtggtgctggcctgcgtcttcctggtctgcgccgtgttcctcctcaacccctgg
accgccggcatcattgtcctcgtactggcgctgatgacagtggagttgtttggaatgatg
ggtctgattggcatcaaactcagtgctgttcccgtggtgatcctcatcgcctccgtcggc
atcggggtggagttcaccgttcacgtagcactggccttcctcactgccatcggcgaccgg
aacaagcgagccatcctggccctggagcacatgttcgccccggtgctggacggggccttc
tccactctgctgggcgtcctcatgctggccggctccgagttcgacttcatcgtcagatac
ttctttgccgtgctcgcgatcttaaccgtgttgggggtcctgaacggactggtgctgctc
cccgtgctcttgtcttatttcgggccctacccagaggtaagtgcacgtgcgtgtcgcccg
tggaatggacggagccagctgcccacccctcacccgagccgcccccggcaggtggttccg
ctttgccgtgcgcccccgccacaccaccaccacgggcaccgctcagactcgtcggactcc
gagtacggctctaacaccaccgtgtccggcatcagccaggagctgcagcagtatgacctc
cggcccagcagggggaagccttccgcccggccggaggaggtgcggccaggcccactgggc
cgccagtctacacatcaggtggacttgcctgcctacccagtgccctcggcgttgcactct
gacccgcggcagcctcagccctaccgctccggccacgcgccccaccctcaggaagccgcc
gcgccgcctcacctcgcccgccgctacagcagcaaagaccccaagagggaccagagcggc
ggccaccagcaccagcagtaccgccgccagccagcacctccgcccccctcgcagccccac
cgctaccccgaaggccccacgggccacagcagggagcgctcggcagggcagcagcagcac
caccgctcggcggcgcaccaccaacaccacccgcacccctcgtccaacccggcctacggc
cagcccatcaccacggtgacggcctctgcgtcggtcaccgtggccgtgcacagcccagct
acccccagcccttcaccctgcccgacagctacccccgtcagccttcaggagacgtactcg
gacagcagcagcagcggcggcagcccgtcattccaggatccacacgtgccctcgcgagac
tccgtcaggcaccgcaggtcccatctagagggcatggacttcaaggacatggagtatgac
gcccccagtggccgcatcgggaccgcctccagctga
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