Clupea harengus (Atlantic herring): 116225061
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Entry
116225061 CDS
T09045
Name
(RefSeq) LOW QUALITY PROTEIN: fibrocystin-L
KO
K27624
fibrocystin-L
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
char03037
]
116225061
Cilium and associated proteins [BR:
char03037
]
Other cilia and associated proteins
Stereociliary proteins
116225061
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TIG
G8
CEMIP_beta-hel
Beta_helix
Beta-sand_ComC_2nd
Motif
Other DBs
NCBI-GeneID:
116225061
NCBI-ProteinID:
XP_042566654
Ensembl:
ENSCHAG00000008502
UniProt:
A0A8M1KYJ0
LinkDB
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Position
19:2073260..2141759
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AA seq
2883 aa
AA seq
DB search
MSASVSLRAHGEGYAWSPAAVLATVGDTVVWRWEAPAFLQGVGFRVFSVANPSSTTPDGF
AFTSGDTNTPTGFFRYQFTSPGVYYYSSGFVDDSSQKSLQGSVTVRGVEDSSIELHVTVG
DFAALIRPAQGRVSRSVEECVPSTPDCPGSASSSNGTSSGGAGLSFSFSSCASPAVHAIS
PASGHALDFIHIQGMGFGTQSCAIEVMVGDHPCQVVNNTETEIFCQLRTDSGADIGIPLP
VSVRVNNLGTAINTAPSEYDRRFVVLPVVDSVSPSSGSTTGHTKLTISGSGFSENVAVTV
DGLPCDVMWANYTMVVCSTAPSSTADRSGPAVVHVGSIASSCQGDCTFTYSASLAPHVFG
VHPDTVTGNLTSVVINGTGFGSDVDDVSVHAGGISLEVTEVTDTTITLSVGPLPGGSHPL
RVVVMSRGLAQGGDGATLSSDARATLSPAAGSTAGGTPLVLMGNGFLPGATSVSLDGAPC
WITEVTPGEVRCLTPPHDAALVEVLVEVLEVLYPALTFNYSQAHTPEVTDVTPATGPSNT
VITLTGSGFGSDASLISVEIDGVACNVAAVTDTQATCAVGEHAGGTFPIMLQHKLKGYAM
SEEVFSYELRLSGVVPSEGGVGGGSIVSVEGTGFEPSSSRVWICESECEVHRDTSTSTHL
YCQVPPANGKMAFISSRRVNGKDSVNVSKWTTPYKSSLTRRVTEVTPRRGGHPAGGTRLA
ILTSFCSTNSSEVSVTIAGSVCDVQSANQTHVVCVTNSQPRSQETKVRVQIGDRGTAPMD
QADFFYIDVWSSRYTWGGLSPPEKGSFAVITKGQTILLDASTPVLKMLLIQGGKLVFDEQ
DIELQAENILITDGGALQVGTEEEPFQHKAIITLHGHLRSPELPVYGAKTLGVREGVLDL
HGIPVPVTWTRLAQTAGSGSSTLVLTHPVTWRSGDQVVIATTGHRHSQRENEVRIISSVS
ADGRTLTLTEPLEYTHLGVSVTLPDGTEFEARAEVGLLTRNIVVRGSNNAEWNDQVEACP
DGFNTGEFATQTCFQGRFGEETGSDQFGGCIMFHAPRPGENLAIGRIEHVEIFNAGQAFR
LGRYPIHWHLMGDVNFKSYVRGCALHQTYNRAVTIHNTHRLLVERNVIYNIMGGAFFIED
GIETGNVLQYNLAVFVKQSTSLLNDDVTPAAYWVTNPDNVIRHNTAVGGTHFGFWYRMHK
NPDGPSYDPNICQQRVPLGEFANNTAHSQGWFGLWIFKEYYPVRDGRCRSKVPEPAVFRS
LTAWNCEKGAEWVDVGAVQFNGFVMVNNEKAGIEGKRIVSSYVRDFSEEAGAAVVNSTLV
GHVDELLLGDDYCSTRGVILPLDDGMSVLSSTFMNFDRPGCTAIGVAAIDGTCKERCGGW
GARFSGIQYYNSPHKAGFRWEHEVNLVDLDGSLTGSAGSKVVPASPLLDPALCTSHDDWS
VGFPGVICDPSVSFHRLAFNHPTPTSLESNLAIFSNDFGASEVPYMKKRMTHKFGWMAML
PSGQTYRWHFDGVAQITNISYDSTFYGFKRDEFIIINHNLTQSPDSFFIMDKRNGSSSPL
TNDDNVNGDWYIDENTNNLYYLVSGQDSHSRRRRRSSVDPEVVDRNVDFKVFSCFYPTCQ
PPPPPPPATLPPLPSRRPDDFISWSSESFWLSSAENNFTVPREGADVVIPIGSWMVLDED
TPPLNRLTVQGVLEVPDHDTTSSSRSRRSTANTIVLDATYISIQGGRLIAGWEDEPFSGE
LHIVLRGTHYTPDWLLPNGPNQGSKVLGVFGTLDLYGKPHDVYHTKLASTTSAGTDTLTL
REAVDWQAGDEVVISTTSYDPWQTEKRTISAVSDDRRTLTLSEPLTHTHIGETYGVSGTS
RTYTLAADVGLLTRNIKIIGHAHAELYSQSFGARLLVGTFSEGGIDYRGEAQIRNVEFYH
TGQEGWSDFYDPRYSVAFVNLGEVPEMESYIQGCGFHDGFSPAIGIFGTDGLTVDDNVIH
FTVGEGIRVWGSSNLIRRNLVTMTLWPGSYQGREEMFNYDWTAAIEVNEGTNTVLIGNIV
AGFERSGYLIDGEPCPGTANPVQAWRDNEAHGGVYGIMMNKDGLPGCSHIQGFTVWRSFD
FGIYFQVSMNIQISNITLVDNGMGIMSIIYAPPSLQHLYADKTVHIQNALIVGTSPDFNC
SDRLSSTETYVRLSRDHGAPRPPMGGRSGICWPAFISGHNAGPTMSLTGSTSYNTIKGLM
TVTDTTFVAFGDVCSTERAVMFLTNPNNEDLQHPVQVKRITQAESTEAGRLLIHRPNLGK
VNPADCVDMDCDAKKKSLLRDEDGTFLGAVGTVVPHAEFEWDGDSRHGVGDYRIPKVMLT
YLNGSRIPVSQIAPRKGVIRDSTCEYVTPWQSYKCFGLNYRMLAIESLDADTETRRLSPV
AVLGDGYIDLMNGPQDHGWCNGYTCQKRLSLFHGIIATNKAFDVYFTGTTPQKLRLMMLN
ARPTETVRVAVFYSNPQRLDVYVNNELVAPTNAEWNSDNTDFTLKEPSYPGMYLPALNST
TNGGNFFDPDYKMLHVLLRGSEPVEVRTSPKLFLSFSLPAMTEDEFFGESLVANLAAFLK
VPASMIRITKIVREGGDARRRKRSTGLSVEVEISKPPVQQTTNTTNDEEAFSELQNLADD
LGQAAISGNLSQAVGFNVSSMGVIPPPPPSSDPTWNEVATAEVTREDPVPEKVTSLASLS
VMQEPVAGLTPGLLSQQPSIMALDQEGSCVAVGVTKLTLTAVLKDSSGTPVDGLYGNTTI
LFKGCWANYTDLSISGPGDNMTLAFTLKEVSASSRSFTIIAVPVTTPSPSTNTTYTATTS
TSGGPTPPDSPIPPIDPDSTTEESTTEDSEYPSVLDGAVAPSSGSLVLLLTLLSCLLLTL
TTL
NT seq
8652 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccagcgtcagtcttagagctcatggcgaggggtacgcatggagccctgcggca
gtgctggccacggtaggggacacggtggtgtggcgttgggaggcgccggcgttcctccag
ggcgttggcttcagggtgttcagcgtggccaaccccagcagcaccacacccgatggcttc
gcattcaccagcggagacaccaacacccccactggcttcttccgctaccagttcacgtcc
cctggtgtgtactactacagcagtggctttgtggacgacagcagccagaagagtctgcag
gggtcggtgacggtccgaggggtcgaggacagcagcatcgagctgcacgtcactgtggga
gacttcgctgctttgatcagaccagcccagggtcgagtgagtaggtctgtggaggagtgt
gtcccctccacccctgactgccccggctcggcctcctcctctaacgggacctcctcgggg
ggcgcaggcctctccttcagcttcagcagctgtgccagtcctgcggtgcacgccatctcg
cccgccagcggccatgccctcgacttcatccacatccagggcatgggcttcggcacccag
agctgtgccattgaggtgatggttggagatcacccttgccaggttgtcaacaacactgag
acagagatcttctgccagctccgcacagacagtggcgcggacattggcatcccacttcct
gtctctgtccgagtgaataacctcggcactgccatcaacaccgcacccagcgaatatgac
cggcgcttcgtggttctgcccgtggtggactcagtaagcccgtccagcggcagcaccacc
gggcacaccaagctgaccatcagcggttctgggttctcagagaacgtagctgtcacagtg
gacggcctcccttgtgatgtcatgtgggcgaactacaccatggttgtgtgcagcacggcc
ccgtcctccactgctgaccgtagtgggcctgcggtggtccacgtgggcagcattgcctcc
tcgtgccagggcgactgcaccttcacctactccgcctcgctggcaccacacgtgtttggc
gtacaccccgacacagtcaccggaaacctgacgtccgtggtcatcaacggcaccgggttc
ggcagcgatgtcgacgacgtgtccgtccacgccggagggatcagccttgaggtgacggag
gtcaccgacaccaccatcaccctctccgtcggcccgctgcccggcggctctcacccgctg
agggtggtggtgatgagccgggggttggcgcaggggggggatggtgccaccctgagcagc
gacgcccgtgccacgctcagccccgcggcgggcagcacggctgggggcaccccgctggtg
ctcatgggtaatgggttcctgccgggagcaaccagtgtgagcctggacggcgccccctgc
tggatcacagaggtgacgccgggagaggtgcgctgcctgacccctcctcatgatgcggcg
ctggtggaggtgctcgtggaggtgctggaggtgctgtacccggcgctgacctttaactac
tcacaggcacacacacctgaggtcaccgacgtcaccccggcaacaggacccagcaacaca
gtcatcactctaacgggctcgggctttggttctgacgccagcctcatctccgtggagata
gacggtgtcgcctgcaacgttgccgcggtaacggacactcaggccacgtgtgccgtgggt
gagcacgccggcggcacctttcccatcatgcttcagcacaaactgaaaggttacgccatg
tccgaggaggtcttcagctacgagctccgtctctcaggggtggttccctccgaagggggt
gttggtgggggcagcatcgtgagcgttgagggcaccgggttcgagcccagctcctcccgg
gtgtggatctgtgagagtgagtgtgaggttcacagggacacgtccacctctacacacctc
tactgccaggtcccgcccgccaacggtaagatggcatttatctccagcaggcgggtgaac
ggcaaagactctgtgaacgtatcaaaatggactactccgtacaaatcctccctgacgcgg
cgcgtcaccgaggtaacgcctcgccgaggcgggcacccagcgggaggcacgagactggcg
attctcacctctttctgcagcacgaacagcagtgaagttagtgtgaccatcgccggatct
gtgtgtgacgtgcagtctgccaaccaaacacacgtagtttgcgtcaccaactcccagccc
aggtctcaggagactaaagtgcgagttcagattggggacaggggcactgctccgatggac
caggcggacttcttctacatagacgtgtggtcctcccggtacacctggggtggtctttct
ccccctgagaagggctcgttcgccgtcatcactaagggccagaccatcctgctggacgcc
agcacccctgtgctcaagatgctcctcatccaaggcggaaagctggtgtttgatgagcag
gacatagaacttcaggcggagaacatcctgatcacggacggaggagcgctgcaggtcgga
accgaagaggaaccgttccagcacaaggccatcatcacgcttcacgggcacctgcgctct
cccgagctgcctgtgtacggagccaagaccctgggggtgcgagagggagtgctggacctc
catggtatccccgtccccgtcacctggacccgcctcgcccagacggctgggagcggctcg
tccacgctggtcctcacacacccggtcacctggaggagcggagaccaggtggtcatcgcc
accactggtcacaggcacagccagagagagaacgaggtgaggatcatctcctcagtgtcc
gcagatggccggacgctcacgctgacggagcccctggagtacacccatctgggggtgtcc
gtcacgctgcctgatgggacggagttcgaggccagggcagaggtgggactcctcaccagg
aacattgtggtgcgcggatcgaacaacgctgagtggaacgaccaggtggaggcctgtcca
gacggctttaacacaggtgagtttgcgacacagacctgcttccaggggaggtttggagag
gagacaggaagtgaccagtttggaggttgcatcatgttccacgcccccagacctggagag
aacctggccatcggcagaattgaacacgttgagatcttcaacgcaggccaggccttccgt
ctgggccgctaccccatccactggcacttgatgggcgacgtcaacttcaagtcgtacgtg
cgcggctgcgccctccaccagacctacaaccgcgccgtgaccatccacaacacgcaccgc
ctcctggtggaacgcaacgtcatctacaacatcatgggcggcgccttcttcatcgaggac
ggcatcgagacgggcaacgtgctccagtacaacctggccgtgttcgtcaagcagagcacc
agcctgctcaacgacgacgtcacgcccgccgcctactgggtcaccaaccccgacaacgtc
atccggcacaacaccgctgttggcgggacccactttgggttctggtaccgcatgcacaag
aatcccgacggtcccagctacgacccgaacatttgccagcagcgcgtgccgctgggcgag
ttcgccaacaatacggcccactcgcagggctggttcggcttgtggatcttcaaggagtac
tacccggtgagggacggcaggtgccggagcaaggtgcccgagcccgccgtgttccgctcg
ctgaccgcctggaactgcgagaagggggcggagtgggtggacgtgggcgccgtgcagttc
aacggcttcgtcatggtcaacaacgagaaggcgggcatcgaggggaaacgcatcgtcagc
agctacgtccgggacttcagcgaggaggccggggcggcggtggtcaacagcaccctggtt
ggccacgtggacgagctgttgctgggcgatgactactgctcgaccagaggggtcatcctg
ccgctggacgacggcatgagcgtcctctccagcacattcatgaactttgaccggccaggc
tgcacggccatcggagtggcggcgattgacgggacctgcaaggagcgctgcgggggatgg
ggtgcccggttctctgggatccagtactacaactcgccccacaaggctggcttcaggtgg
gagcacgaggtcaacctcgtcgacctggatggctccctcacaggctctgcgggcagtaag
gtggtgccagcgagccctctgttggacccggccctatgcacgtctcacgatgactggagc
gttggcttccccggggtcatctgtgatcccagcgtcagcttccaccgcctggccttcaac
cacccaacgcccacctccctggagagcaacctcgccatcttctccaatgactttggtgca
agtgaggttccatacatgaagaagaggatgactcacaagtttggctggatggcgatgctt
ccgtctggacagacatacaggtggcactttgatggcgtggctcagatcaccaacatatca
tatgactccactttctatgggtttaagcgcgacgagttcatcatcatcaaccacaatctg
actcagagtccagacagtttcttcatcatggacaagagaaatggctcctcctcccctctg
acgaatgatgataatgtgaatggagactggtatatcgacgagaacaccaacaacctgtac
tacttagtgtccggacaggactctcacagccgccgtagacgtcgttccagtgtggacccc
gaggtagtggacaggaatgtggacttcaaggtgttcagctgcttctaccccacctgccag
ccccccccaccgcctcccccagcaacactccccccgctaccctcacgaaggcctgatgac
tttatctcctggtccagcgagtccttctggctctcgtctgctgagaacaacttcaccgtg
cccagagagggcgctgatgtggttatcccaatagggtcttggatggtgctagatgaagac
acccctcctctgaacagattgacggtgcagggtgtcctggaggtccccgatcatgacacc
acgtcctcctctcgctccagacgctccacagccaacacaatcgtcctggacgccacctac
atctccattcagggaggtcgtctgatagcaggctgggaggacgagcccttcagcggggaa
ctgcacatcgtcctgagaggaactcactacacccccgactggctgctgcccaacggcccc
aaccagggctccaaagtgctgggtgtgtttggcactctggacctctatggaaagccccac
gacgtctaccacaccaaactggcaagcaccacgtcggctggcacagacaccctcaccctt
cgtgaggctgttgactggcaggcaggggatgaagtggtcatctccaccaccagctatgac
ccatggcagacagagaagaggaccatatccgccgtctctgatgacagaaggacactcaca
ctgagcgagccgctcacacacactcatatcggggagacctatggtgtcagcggcacctcg
aggacctacacactggcagcagatgtggggctgctgaccaggaacatcaagattattggc
cacgcccacgctgagctgtacagccaatcgtttggcgctcgcctgctggtgggcaccttc
tcagagggaggcatcgactacagaggagaagctcagataaggaatgtggagttttaccac
actggacaggagggatggtccgatttctacgacccgcgctactctgtagcttttgtcaat
ttgggagaggtgcctgagatggagtcctacatccagggatgtggtttccatgacggcttc
tctcctgccatcggcatctttggcacagatggactgactgtagatgacaacgtcatccac
ttcactgtaggagaagggatcagagtatggggcagcagcaacctgatcagaaggaacctg
gtgaccatgaccctgtggcccgggtcctaccagggccgagaggagatgtttaactacgac
tggaccgccgccatagaggtgaatgaaggcacaaatacggttctcattggcaatatagtt
gcaggttttgagagatcagggtaccttattgatggagagccatgcccaggaacggccaat
ccggtgcaggcgtggcgggataacgaggcccacggcggcgtctacggcatcatgatgaac
aaggacggcctgccgggctgctcacacatccagggctttaccgtgtggcgcagcttcgac
tttgggatctacttccaggtttccatgaatattcagatatctaacatcactctggtggat
aacggcatggggatcatgtcaatcatctacgccccgccctctctgcaacacctgtatgct
gataaaaccgtacatattcagaatgccctgattgttggcaccagtccagacttcaactgc
tctgaccggttgtcctcgactgagacgtacgtccgactgtccagggaccacggagctccc
cgccctcccatgggtggcaggtctgggatctgctggccagccttcatatcaggacacaac
gccggccccaccatgtccctcaccggctccaccagctacaacaccatcaagggcctcatg
acagtcaccgacacaacatttgtggctttcggggacgtgtgttcgactgaaagagccgtg
atgttcctgactaaccccaacaacgaggacctccagcaccctgtgcaggtgaagcgcatc
acccaggccgagagcaccgaggcgggcagactgctcatccatcggccaaacctcgggaag
gtgaacccggcggactgcgtggacatggactgcgatgccaagaagaagagccttctgagg
gacgaggacggcaccttcctgggcgcggtgggcaccgtggtgccccacgcagagttcgag
tgggacggagacagcaggcatggagtgggcgactacaggatccccaaggtcatgctcacc
tacctcaacggcagccgcatacctgtcagtcagatagcaccccgcaaaggtgtgataagg
gactccacctgcgagtacgtgaccccgtggcagagctacaagtgctttggtctgaactac
aggatgctggcgatcgagagtctggatgctgacacggagaccagacgcctgtctccagtg
gcggtgctgggggacggctacatcgacctgatgaacgggccccaggaccatggctggtgt
aacggctacacgtgccagaagaggctctctctcttccacggcatcatcgccaccaacaag
gccttcgacgtctacttcaccggcaccaccccccagaagctccgcctcatgatgctcaac
gccaggccaacagagactgtgcgcgtggccgtgttctactccaaccctcagcgtctggac
gtttacgtcaacaacgagctggtggctccgaccaacgcagaatggaacagcgataacaca
gacttcacactcaaggagccctcatacccagggatgtatttgcctgcactgaactctacc
acgaacggtggcaacttcttcgacccggactacaagatgctccatgtgctgctgcgcggc
tctgagcccgtggaggtccgcacatcgcccaagctcttcctctccttcagcctgcccgcc
atgacggaggacgagttcttcggcgaaagcctggtcgccaacctggcagccttcctgaag
gttccggccagcatgatccgcatcaccaagatcgtgagggaggggggcgacgcacggcga
cgcaagcggtccacgggtctctccgtagaggtggagatcagcaagcctcctgtccagcag
accaccaacaccaccaatgatgaggaagccttttctgagctgcagaaccttgctgatgac
ctgggccaggcggccatctcagggaacctcagccaggccgtaggcttcaacgtgtcctcc
atgggggtcatcccaccccccccaccatcctcagaccccacctggaacgaggtggccacc
gctgaggtgacccgtgaggacccggtaccggagaaagtgacgagcctggcctccctgagc
gtgatgcaggagcctgtggccggactcacccccggactcctcagccagcagcccagcatc
atggctctggaccaggaggggagctgtgtggcggttggggtcactaaactgactctgaca
gctgtgctgaaggactccagcggtactccagtggatggtctctatggaaacacaaccatt
ctattcaaaggatgctgggctaactatactgacctgagcatctctggacctggtgataac
atgactctggctttcactctgaaagaagtgagtgcctcttcccggtccttcaccatcata
gccgtaccagttaccacacccagcccctccaccaacaccacctacaccgcaaccaccagc
accagcggagggccgactccgcccgactcacccatacccccaatcgaccctgactccacc
acagaggagtccaccacagaagacagtgaatacccaagtgtgctggacggcgctgttgct
ccatcctctggctctctggtcctcctcctcaccctcctctcctgcctgctcctcaccctg
acaaccctctga
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integrated database retrieval system
