Clupea harengus (Atlantic herring): 122129263
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Entry
122129263 CDS
T09045
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RBBP6-like
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
122129263
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122129263
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
U-box type E3
122129263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_2
zf-C3HC4_3
zf-CCHC
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-C3HC4_4
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
122129263
NCBI-ProteinID:
XP_042560186
UniProt:
A0A8M1K837
LinkDB
All DBs
Position
Unknown
AA seq
1916 aa
AA seq
DB search
MSCVHYKFSSKLNYDTVTFDGLHITLSDLKRQIMGREKLKAADCDLQITNAQTKEEYTDD
GAFISKNSSVIIRRIPIGGVKATSKTFVIDRSEPPSGPSKAMIDDSPGSISLAQLSKTAN
LAEANASEEDKIRAMMSQSNHDYDPIHYMKKLVGPPPPNYTCFRCGKNGHYIRNCPTNGQ
DKSFEAPQRIKKSTGIPRSFMMEVDDPSMKGAMLTNTGRYAIPTIDAEAYAIGKKEKPPF
LPQEQSSSSEEEDPVPDELLCLLCKDLMTDAVVIPCCGNSYCDDCIRTSLLESEEHTCPT
CNQSDVSPDALIANKFLRQAVNNFKNETGYTKRIRKANQASAMAQAPQPRLQRPVQAVRP
PASRQQDPLMANMPRPAAAITPPQAPPAATAPAPSAVTQQASDXPPPSSTNPLESSSAPP
RTGSYSPTVSSPPRAVKLEDNQAPKESDPTAPGPSVTVSTDQSGPPPLIPKGFQVQVLGP
PHQLGPPHQLGQPHQLGPPHQLGHSMQRSGHPPHPGPPGRSSGPRPSGRPGWDPSSGRGR
MHGDRPPRSQGPPLQPPPVQQPPPQHHQQPPLQPPPVGPHVYGVAPPALYAPPQHPIPQP
PNVVPPPYSLPYNASPQPAPSFNVPPPGYPPALPNVVAPWVPPGTQPPVANPVPPTPFLS
REEFYRQQRRLKEDTQCRFPTREKSKLEKFTNDFAKELLEYRKIQKERRRSYSRSRSPYR
GSSYSGSSYSYSKSRSRSRSRSRSYSRSISRSRSRSRSRSYSRSPYPRRARARSRSYRSR
SRSHGYRRSRSRSPSFKGRDSGPVSSAPYRSRSRSPPYRSHSPNKKQGPPPLLDLDRERK
FTGRYRDPVPFDLKAFYGREVDMSDPYERERYKQWEREYREWYEKYGKSYHNAPADQPRE
PREPREPREPREPREPRGRAPLVTREPYTPERLPLMRQRDTSPYTRGRRDDYSPPPQSHG
SGGSSRSRNPALTYQERCAEKYGVAGGPSIPGPGPSRGSSSKDPLKAPKEREPSNSSSAA
DPKGLKHKKHRKKRKGDDCDLFGHSDSMDDNRKDDRKGDGPLMASSRDDATPVRDEPMDG
AAVPYKSTSDKERKEKTKGKVEKVKRKADNSASKKETSGKTTKSSRDREVDTERDAKTSS
LEPPFKRTKEDLSHKAEAIKPSTPLKEEKAMLARKVPRQAKHHQETKQVKEEPKAKKDLV
KDSAKPEKGLTKEVKSKRDVEKAIKTEEKPFIKAADIKQEKRRRKDDSSAGKELDLPTIK
SPRVDVPEMAKGSPKPKIKAETEKPPEKLKPAIPPLMDIKPGPLRKIKINREIGKRISTD
TAPSPEHRDEAPKSRPDKTRGKMRRRVQATDGSGSILVDYTSTSSTGGSPIKRLEEKADL
RKTVVKTLEEYTNDSTTAAEDEIVLIQVPRSKWEKEDYESEEDESKGTELNRNGSHSGSD
APQKALASTTVKVNDQASPPAEKASTSSKEGQMEVKPGKDSTPSDKEREEKKETEKERER
EKDKDKDKDREKDKERERDRERERDREREREREKDWERGRERERERERPASDREPSEKRK
PVGSNGDRERTQERSSDHGSEKGSSSSTQSSFRDRQSERPDPASRKLTSRDHSTASSAER
RPDHRSSGRDHSDTKPKDGKPREPIRRRESPPPTSKGRDREAHTDAAKRPSTNEAHSFEP
TDRRQHQSAPDSKRAAPEEHRTERPVSREGVARHVDSRPNREREHSGHRTPENKMSSPEA
RADGGRGAATSRVERDHPKVKPLSARSARLPSDLGRETDEAAFVPDYSESESEASDTESR
AEARGRDRDGDSSASPSHSQSQSPAGSNARSSSASSTGSQDNKKKKDKKEKEKKEKKKHK
KHKKHKKHKKHGDNELDLEQKGQKHKHKKKKSKKSKDKDKDEKERADDQKEDKVSV
NT seq
5751 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtgttcattacaaattttcatcaaagcttaactatgacacggtcacatttgat
ggccttcatatcacgttgagtgatttgaaaagacagatcatgggtcgggaaaaactgaag
gctgctgactgcgacttacagattaccaacgcgcagacgaaagaagagtacacggatgat
ggagcattcatatcaaaaaattcttcagtcatcattagacgaatcccaattggtggtgtc
aaagcaacaagcaaaacttttgttattgatcgatcagaacctccaagtggaccatcaaaa
gcaatgattgatgattctcctggcagcatttcattggcccagctctcaaagaccgccaat
cttgctgaggcgaatgcatccgaggaagacaaaattagagctatgatgtcacagtccaat
catgactatgatcctatacattacatgaagaagcttgtgggacctccgcctccaaactac
acctgttttagatgtgggaaaaatggacactacatacggaactgtccgacaaacgggcag
gacaaaagctttgaggctccacaaaggatcaaaaagagcacaggaatacctcgaagcttt
atgatggaggtggatgacccgagcatgaagggagctatgctaaccaacacaggacgctat
gctatccccaccatagatgcggaggcctatgctattgggaagaaggagaagcctccattc
ctccctcaggagcagtcctcatcctcagaggaagaggaccctgttcctgatgaactgctg
tgcctcctctgcaaagacctcatgaccgatgcagtcgtaatcccctgctgcggaaacagc
tactgtgacgattgtatccgtacttccttgctggagtcagaagagcacacgtgtcctact
tgtaaccagtctgacgtctccccagatgccttaattgccaacaagttcttacgccaagcg
gtgaacaacttcaaaaatgagactggttacaccaagcggatccgtaaggccaatcaggca
tctgccatggcacaggctccccagccccgtcttcagcgccccgtccaggctgtccggccc
cccgcctcccgtcagcaggaccccctgatggccaacatgccccggcccgcagcagctatt
acccctccccaagctccaccagcggccactgcacccgcaccctcggctgtcacccagcag
gcttccgacnccccccctccatccagtaccaaccccttagagagcagtagcgcgccacct
agaacaggcagctacagcccaacagtgtcctctccaccgcgtgccgtcaagctggaggac
aaccaagcaccaaaggagtcagaccctacggcaccaggcccatctgtgactgtctcaaca
gatcaatcaggtccaccgcctctcattccgaagggattccaggttcaagtgcttggacca
ccacaccagcttggtccaccacaccagcttggtcaaccacaccagcttggaccaccacac
cagcttggccactctatgcagagatcaggccacccaccccacccaggaccaccgggtaga
tctagtggtccgagacccagtggtcgaccaggatgggatccctcttctggcagaggaagg
atgcacggtgaccgtcccccacgctctcagggaccacctctgcagcccccacctgtgcag
cagccaccaccgcagcatcatcagcagccaccactgcagcctcctcctgtgggtcctcat
gtgtatggggttgctcctccagccctctatgccccaccacagcatcccatccctcagcca
ccaaatgtggtccctccgccatactccttgccgtacaacgccagcccgcagcctgcaccc
agtttcaatgtgccccctcctgggtatcctccagctttgcctaatgttgtcgctccctgg
gtgccacctggcacccagcctcctgtagccaaccctgtgccaccaacaccattcctgtcc
agggaggagttctacaggcagcagcgtaggcttaaagaggatacgcaatgtcgattccct
accagggagaagtcaaaattggaaaaattcaccaacgactttgccaaggagctgctggaa
tatagaaagattcaaaaggagaggagacggtcctattctaggtccaggtctccttataga
ggctcatcctacagcggctcttcctacagctattcaaagtcccgctctcggtcccgttcc
aggtctcgatcgtactcgagatcaatcagccgctcccgctctcgttcacgctctcgctct
tattcccgttcgccttacccccgccgtgcaagggcccgtagccgtagctatcgctccagg
tctcgatcacatggctaccgccgctcccgatcccgttccccctctttcaaaggtcgagac
agtgggccagtgagtagtgcaccctaccgctcacgctccaggtcacctccatacaggagc
cacagcccaaacaagaaacagggtcctcccccactccttgaccttgaccgtgagcgcaaa
ttcacaggacggtacagagacccggtcccatttgacctcaaagccttctacggccgagag
gtagatatgtctgacccctatgagcgggaaaggtataagcagtgggagagggaatatcgt
gagtggtatgaaaagtatggtaagtcctaccataatgccccagctgaccagccccgagag
ccccgagaacccagagagccccgagaaccccgagaaccccgagagccccgaggccgggca
cccttagttaccagggagccatacacccctgagcgtttgcccttgatgcgtcaaagagac
acttctccctatacacgggggcgtagagatgactattctccccctccccagagccatgga
agcggtggaagttctagaagtcgcaacccagcgctcacataccaggagaggtgtgctgag
aaatatggagtagctggtggtccgagcattcctggacctggacccagcagaggaagcagt
agcaaagatcccctaaaagcacccaaagaaagagagccttccaacagcagttcagctgcc
gaccccaaaggcctaaaacacaagaagcacaggaagaagaggaagggtgacgactgtgat
ctgtttggccactctgactccatggacgacaatagaaaagatgatcgcaaaggggatggt
cccctgatggcctccagtcgcgatgatgccactccagtcagagacgaacccatggacggc
gctgcagttccttacaaaagcacctcagacaaggagaggaaagagaagacaaagggaaaa
gttgagaaggtgaagcgtaaggctgacaacagtgcctcaaagaaagaaacaagcggaaag
actaccaagtcctccagagacagggaggtagacacggagcgtgatgccaagacctcttcg
cttgagcctcctttcaaacgaaccaaggaagacctgtctcataaggcagaggccattaag
ccatccacccctctgaaagaagagaaggcaatgttggctcgcaaagtgccaagacaagca
aagcaccatcaagagactaaacaggtcaaagaggaaccaaaagccaagaaggatctggta
aaagactcagctaaaccagagaaaggtcttaccaaagaggttaagtcaaagagggatgtt
gaaaaagccatcaagactgaggagaagccatttatcaaggcagcggatatcaagcaagaa
aagaggaggagaaaagatgattcaagtgcagggaaagagcttgatttgcccacgattaag
tccccaagagtagatgttcctgagatggccaaggggtccccaaaacctaaaattaaagca
gagactgagaagccaccagagaagctaaagcctgctatcccacctctgatggacattaaa
ccagggcctctgagaaagatcaagatcaaccgtgagattggcaaaaggatcagcacagac
acggcgccctcgcctgaacacagagatgaagccccaaagagccgacccgataagacgagg
ggaaagatgcgccgaagagttcaggctactgacggctcaggttcaatcctggtggactac
acaagcactagctcaactggaggtagtcccatcaagaggctggaggagaaggctgatttg
agaaagactgtagtcaagacccttgaagaatacaccaatgatagcaccacggctgcagag
gatgagattgtcttgatccaagtgccacgctccaagtgggagaaggaagactacgaatca
gaggaagatgagtccaagggaacagaattgaaccgcaatggcagccattctggatcggat
gccccacagaaggcactcgctagtaccactgtgaaggtaaatgatcaggcatctccccct
gcagagaaggcttccacctcttctaaggaaggccagatggaagtcaagcctggtaaagac
tccacaccttcagacaaggagagagaggagaaaaaggaaactgagaaagaaagggagagg
gaaaaagacaaagacaaagataaagacagggaaaaagacaaagagcgggaaagagaccgt
gaacgggaaagggacagggagcgggaaagagagcgagagaaagattgggaacgagggcgt
gagcgagagagggagagagagcgccctgcctctgaccgtgagccttcagagaaaagaaaa
cccgtcgggtccaacggtgaccgagaacgcacccaggagcgaagcagtgaccatggcagt
gaaaagggctcatcctcttctacccagtcttccttccgggaccgacagtcagagaggcct
gatccagcctcccgcaagcttaccagcagggaccacagcactgcctcctccgctgaacgc
aggcctgaccaccggtccagtggtagggaccactccgataccaaacccaaagacggcaag
cccagagagcccattaggaggagggagtccccacctcccacttcaaaaggaagggatcgg
gaggctcacactgatgcggccaagcgcccctccaccaatgaggctcacagttttgagccg
acggatagacggcagcaccagagtgcgcctgattcaaagcgcgccgcgcctgaggaacac
agaacagagcgtccagtgagtagagagggggtcgcaaggcacgtggacagtcggcccaac
cgggaacgggagcacagtggacaccggacccctgaaaacaagatgtcttcacccgaagcc
cgggctgatggtggaagaggtgccgccacgtcacgtgtggagagggaccaccccaaagtc
aagcccctgtcggcccgctccgcacgtcttccgtccgacctaggccgtgaaacggacgag
gcggcttttgtgccggactacagtgagagtgaaagcgaggcctcggacaccgagagcagg
gccgaggccaggggaagagaccgtgacggcgacagcagtgcctcacccagccacagtcag
agccagagcccagccggcagcaacgcacgcagcagcagtgcaagctccaccggcagccag
gacaacaaaaagaaaaaggacaagaaggagaaagagaagaaagagaagaagaagcataag
aaacacaagaaacacaaaaagcataagaagcacggcgacaacgagttggacttggagcag
aagggacagaaacataagcataagaaaaagaagtctaaaaagagcaaggacaaagacaaa
gatgagaaagagagagcagatgaccagaaggaggataaagtatctgtatga
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integrated database retrieval system
