Clupea harengus (Atlantic herring): 122129265
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Entry
122129265 CDS
T09045
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03440
Homologous recombination
char03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122129265 (top3a)
03460 Fanconi anemia pathway
122129265 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
char03032
]
122129265 (top3a)
03400 DNA repair and recombination proteins [BR:
char03400
]
122129265 (top3a)
Enzymes [BR:
char01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
122129265 (top3a)
DNA replication proteins [BR:
char03032
]
Eukaryotic type
DNA Topoisomerases
122129265 (top3a)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
122129265 (top3a)
FA (Fanconi anemia) pathway
122129265 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
122129265
NCBI-ProteinID:
XP_042560188
UniProt:
A0A8M1KD28
LinkDB
All DBs
Position
Unknown
AA seq
1024 aa
AA seq
DB search
MIINVITKSLLQVTRLSVQRRFCQQGSENMIRRTPIKKVLCVAEKNDAAKGIAEIMSNGR
ARRREGLSVYNKLYEYEYNLFGQDVSVTMTSVSGHLLGLEFKTPFQKWHSCNPVLLFEAE
VEKYCPENFVQIKRTLEKEIRQCQALVIWTDCDREGENIGFEVIDVCKAVKPNIQVFRAR
FSEITPNSIRRACETLTEPNNNISDAVDVRQELDLRIGAAFTRFQTLRLQKIFPASLANQ
LISYGSCQFPTLGFVVERFKSIQAFIPETFFKIKVVHEPNEEETVEFGWKRHRLFSHTAC
LVLYQICMEEPTATVVAVTSKPKSKWRPQPLDTVELEKLASRKLKISAKETMKIAEKLYT
QGFISYPRTETNIFPKDLNLTSLVEQQTQDNEWGGFAQGILDRSGPNPRNGNKSDQAHPP
IHPTKYTSGLQGNEKRLYEFIVRHFLACCSQDAQGQETIVDIDIAEEKFSASGLMIIARN
YLDVYPYDKWYTKIIPVYERGSQFQPSAIEMVDGQTSPPQLLTEADLISLMEKHGIGTDA
THADHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKPDLRAELEADLKLVS
EGRKDKASVLPHHVAKYKAVFIESVRKAKKLDEALSNYLGQAQEYTEQEQAMEFPMPVRK
CPSCNRDMVLRQKKDSTMKFLSCTGYPACKAAVWFPESVLEVSRDDSICPTCQPHPVHML
KLKFKRGSLPPMMPLEFVGCIGGCDETLREVLNLKYLRPGVGGGEGGGGGGRPGSQSSYN
AAPRQQSQTRANPAARPRADSSRPPAPRPRSESGRPSAPPPAPGWSSQPPAAAHNNTTVC
NCSQDALLLTVRKEGPNQGRQFYKCNTGNCTFFLWADQQNDQGAGQTAERNQPPRQTPQP
PRPSLGFGNTNQGFGNGGPAGGNEGETMCNCNEPAVTRSVMKDGPNKGRTFHTCGKPREQ
QCGFFQWADENVPPVSRGFNNEETERRGRKTGPSSTKAPAAKRPRTCGICHQPGHTRTTC
PQGN
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgatcatcaatgttatcactaaatcactccttcaagtgacacgactgtcagtacagaga
cgattttgtcagcaagggtcagaaaacatgataagacgaactccgattaagaaagttttg
tgcgttgctgagaagaacgatgcagccaaggggatagctgagataatgtcaaatggaagg
gcaagaaggagagaaggattatctgtgtacaacaagttatatgagtatgagtataacttg
ttcggtcaggatgtctctgtgacgatgacatcagtatctggacatctccttggtttggaa
ttcaaaactccttttcaaaaatggcacagttgtaatccagtcctgttatttgaagcagag
gttgaaaaatattgccctgaaaactttgtacaaataaagaggactctagagaaagagatt
cgacaatgccaggctcttgtcatctggacagattgtgacagagaaggagaaaacattggc
tttgaggtcattgatgtttgcaaagcagtcaagccaaacatccaagtgtttcgagcccgt
ttttctgaaatcacacccaactctatcaggagagcttgtgagacactgacagagccaaat
aacaacatcagtgatgcggtggatgtcagacaagagctggatttgcgcattggagcggca
tttacaaggtttcagaccctacgtttacagaagatcttcccagcatctctcgccaatcag
ctcatcagctatggaagctgccagtttcctaccctgggatttgtggtggagcggttcaaa
tccatccaagcattcattcctgagaccttctttaagatcaaagtggtccatgaaccaaat
gaggaggaaactgtggaattcggttggaaaaggcatcgtctcttcagccatacagcctgc
cttgtgctctatcagatttgcatggaggaacccacagccacggtggttgctgttacaagt
aaacccaaaagtaaatggagaccacaacctcttgacactgttgaacttgagaaattggct
tcacgcaaattaaagatcagtgcgaaagaaaccatgaaaatagcagaaaaactttacact
caagggtttatcagctatccccgtactgagaccaacattttcccaaaagacctcaacttg
acctccctggtggagcagcagacgcaggataatgagtgggggggatttgcacagggcatc
ctggaccggagtgggcccaatccacgaaacggaaacaaatccgatcaagcccatcccccc
attcaccccaccaagtacacaagcggccttcagggcaacgaaaaacgtctgtacgagttt
attgtccgtcatttcctggcttgttgctcccaggatgcccagggacaggaaaccattgtt
gatattgacatagctgaagagaaattctctgcaagtggccttatgatcattgccaggaac
tatctggatgtttacccctatgataaatggtatacaaagataatcccagtctatgaacga
gggtctcagtttcagccatcggccatagagatggtagacggacagacgagcccaccacaa
ctgctcacggaggctgaccttatttccctcatggagaaacatggcattggcaccgatgcc
acacatgcagaccacatagagaccatcaagagccgaatgtacgttgggctgactgcagac
cagaggtttctcccaggagaacttggaatgggccttgtggagggttacaactccatgggc
tatgagatgtccaagccggacctgagagcagagctggaagctgacctcaaactggtctct
gaggggagaaaggataaagcctctgtcctgccgcaccatgtggccaaatacaaggctgtc
tttattgagtctgtaaggaaggcaaagaagttggatgaggctctgtccaactatctaggc
caggctcaggagtacacagagcaggagcaggcgatggagtttcccatgccagtgcggaag
tgccccagctgtaaccgagacatggttttgagacagaaaaaggacagcaccatgaaattt
ctgtcgtgtacgggatacccggcctgtaaggcagctgtgtggttccccgagtctgtgctg
gaggtcagccgagacgacagtatttgtccaacatgccaacctcatcctgtgcacatgctg
aagttgaaattcaagaggggaagcctacctcccatgatgcctttagagtttgtgggttgc
atcggtggatgtgatgagactttgagagaggtgctgaatctgaagtacctgaggccaggg
gtaggtggaggtgaaggaggaggaggaggaggaagaccaggcagtcaatccagttacaac
gccgccccacgccagcagagtcagaccagagcaaacccagcggcgaggcccagggctgac
agcagtagaccacccgccccaaggcctcgatctgagagtggcaggccctctgctccacct
cctgcacctggctggtcgagtcagccacctgctgctgcccacaacaacaccacggtgtgc
aactgcagccaggatgcgcttctccttaccgtgcgcaaggaaggtccaaatcagggtcgg
cagttctacaagtgcaacactgggaactgtactttcttcttgtgggccgaccagcagaac
gaccagggggcagggcagaccgcagagagaaaccagcctcctcgacaaacccctcaacct
cccaggccatcccttgggtttggtaacacaaaccaagggttcggtaacggcgggcctgct
ggtggaaatgaaggggagaccatgtgtaactgtaatgaaccggctgtcaccagaagcgtc
atgaaggatgggcccaataaagggcgcacgtttcacacctgcgggaaaccgcgagagcag
cagtgtgggttcttccagtgggccgacgagaacgtcccaccagtctcaagaggtttcaac
aatgaagaaacagaaagaagagggagaaagacgggaccttcctcaacaaaagctccggca
gccaagagaccaaggacttgtgggatatgccatcagcctggacacacacggacaacatgc
ccacagggcaattaa
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