Clupea harengus (Atlantic herring): 122129267
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Entry
122129267 CDS
T09045
Symbol
shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char00260
Glycine, serine and threonine metabolism
char00630
Glyoxylate and dicarboxylate metabolism
char00670
One carbon pool by folate
char01100
Metabolic pathways
char01200
Carbon metabolism
char01230
Biosynthesis of amino acids
char01240
Biosynthesis of cofactors
char04981
Folate transport and metabolism
Module
char_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
char00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
122129267 (shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
122129267 (shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
122129267 (shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
122129267 (shmt1)
Enzymes [BR:
char01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
122129267 (shmt1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
SHCBP_N
DIX
E2_bind
Motif
Other DBs
NCBI-GeneID:
122129267
NCBI-ProteinID:
XP_042560190
UniProt:
A0A8M1K842
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MDCVNGNQIDSDSWESHNRMMLEPLCTNDPEVFDIIKKEKRRQIYGLELIASENFTSRAV
LEALGSCMNNKYSEGYPGQRYYGGTEHVDELELLCQKRFLEVYGLDSDKWGVNVQPYSGS
PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYI
DYDRLQENARLFHPKMIIAGTSCYSRNLDYARMRKIADENGAYLMGDMAHISGLVAAGVV
PSPFEYCDIVSTTTHKTLRGCRSGVIFFRKGVRSVDPKTGKETMFNLENPINQAVFPGLQ
GGPHNHAIAGVAVALKQALTPEFKDYQKQVLENCRALGSTLMNKGYKIVTGGSDNHLILL
DLRPHGSDGGRAEKVLEACAIACNKNTCPGDKSALRPSGLRLGSPALTSRGLVKDDFCKV
GEFIHRGIELTIEIQASMNPKATLKEFKDLLAKSEKYQMKAKEIREEVEAFAGKFPMPGL
PEL
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggattgtgtcaacggtaaccaaattgacagtgacagctgggagtctcacaacaggatg
atgctggagccgctatgtaccaatgatcccgaggtgtttgacatcatcaagaaggaaaag
agaaggcagatctacgggctagaactcatcgcctcagagaatttcaccagtcgggcggtg
ttggaagccctggggtcatgcatgaacaacaaatactcagaaggctaccctggccagagg
tattatggaggcacagagcatgttgatgagctggaattgttgtgtcagaagaggtttttg
gaggtctatggcctagactctgataaatggggggtcaacgttcagccttactcagggtcg
ccggccaactttgctgtatacacagccttggtagagcctcacggaagaatcatgggcctt
gacctcccagacggaggtcacctcacacatggtttcatgaccgacaaaaagaagatttcg
gcaacctccatattctttgagtctatgccgtacaaggtcaatccggatactggttacatt
gactatgaccgcctgcaggaaaatgcccgcctttttcatccaaaaatgatcattgcaggt
acaagctgttactcgcgtaacctggattatgcgcgcatgagaaagattgcagatgagaac
ggagcgtatctgatgggggacatggctcacattagtgggctggttgcagccggagtggtt
ccctctccctttgaatactgcgacattgtgtccacaaccactcacaagaccctgagaggc
tgcagatcaggagtcatcttctttaggaagggggtacgcagtgtggacccaaagactggc
aaggagaccatgttcaacctggagaacccgatcaaccaggcagtgttcccagggctgcag
ggaggtccccacaaccacgccattgcaggagttgctgtggcactgaaacaagccctaact
ccagagttcaaggactaccagaaacaggtgctggagaactgcagggcattgggatcgacg
ctgatgaataagggctataagattgtgaccggtggctccgacaatcaccttatcttgctc
gaccttcgaccccacggcagtgacggagggagggcagagaaggtcctggaggcgtgtgct
attgcttgcaacaaaaacacatgcccaggagacaaaagtgccctgcgccccagcggcctg
cgacttggctccccagccctcacctcccgggggttggtaaaggacgatttctgcaaagtt
ggcgagtttatccacagaggtattgagctcaccattgagatccaggcgagcatgaacccc
aaggctactctgaaggagttcaaggacctgcttgccaaaagtgagaagtaccaaatgaaa
gcgaaagagataagggaagaagttgaggcttttgctggcaagttccccatgcctggactt
ccagagttgtga
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