KEGG   Clupea harengus (Atlantic herring): 122129538
Entry
122129538         CDS       T09045                                 
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122129538 (prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:char03041]
    122129538 (prpf4)
Spliceosome [BR:char03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    122129538 (prpf4)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_Gbeta WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st Beta-prop_EML WD40_MABP1-WDR62_1st PRP4 ANAPC4_WD40 Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_EIPR1 NBCH_WD40 Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_IFT122_1st WD40_like Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_WDR11_1st Beta-prop_Nup120_160 Tricorn_2nd Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 122129538
NCBI-ProteinID: XP_042560405
UniProt: A0A8M1K8P2
LinkDB
Position
Unknown
AA seq 507 aa
MSDDEDAPMVKKSRIFYGSLEEKERERLGREGGTGSGKDGVKAGIDAGNINISSGEVMEL
EDRMSERQSDVLLEFERRKRARQITVSTDDAEVKACLRALGEPITLFGEGPAERRERLRA
VLSVVGPDALKKSKKEEEKSKRSQDECQQTWYHEGPTSLKDARLWIAHYSLPRAMTRLEE
ARAHKEIPESTRTVKQQEQHKNLRNLNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLC
KLWNIPDCSLVRTLRGHNTHVGAISFHPKATLSLEDSDINMASCSTDGTVKLWSLDSDEP
VADIEGHSVRVARVAWHPSGRFLGTTCYDNSWRLWDLDAQEEILHQEGHSKGVHDLDFHP
DGSLAGTGGLDAFGRVWDLRTGRCVMFLEGHLKEIYSINFSPNGFNVATGSGDHTCKVWD
LRQRKCIYTIPAHQNLLSSVKFQPTDGHYLLTGAYDNMAKVWTHPGWSPLKTLAGHEGKV
MGLDLSPDGQFIATCSYDRTFKLWMSE
NT seq 1524 nt   +upstreamnt  +downstreamnt
atgtcggacgacgaggacgcccccatggtgaagaagtctcgcatcttctatggaagtctg
gaggagaaggagcgggaacgtttgggccgggaagggggcactgggtcaggaaaagatggg
gtcaaagctggaatcgatgctggcaacatcaacatctctagtggtgaagtgatggagctg
gaggatcgtatgagcgagagacagtcagatgtgctgcttgaatttgagaggcgcaagagg
gcgaggcagatcaccgtatccactgacgacgcagaggtcaaagcttgcttgcgggctctc
ggcgagccaatcacactctttggggaggggcccgcagagagacgagaaagattaagggcc
gtcctgtctgtggtggggcctgacgcactgaagaagtctaagaaggaggaagaaaaatcc
aagcgcagccaggatgagtgtcagcagacctggtatcacgagggccctacttctctgaaa
gatgctcgactgtggattgcccactactctttgcccagggcaatgacacgactggaggag
gccagagcccacaaggaaatcccagagtccacacgcaccgtcaagcaacaggagcaacac
aaaaacctcaggaatctaaataacttctgcagtcagattggagatgacagacctatctca
tactgtcagttcagtccaaactctaaactactggtaacagcgtcttggagtggcttatgt
aaactctggaacatcccagactgcagcttggtccgcacactaaggggtcacaatacccat
gtgggggcaatcagctttcacccaaaggccacactgtccctggaggattcggacatcaac
atggcctcttgttccaccgatggaacagtcaagctgtggagtttggacagtgacgagcca
gtggccgacatagaggggcactctgtgagagtggcacgagtagcctggcacccatctggg
cgcttccttggtaccacctgttatgataactcctggcggctgtgggacttggacgcccaa
gaggaaattcttcaccaagagggccacagcaagggtgtccatgacctggacttccaccca
gatggctctttggcagggacaggtggtttggacgcgtttggccgtgtttgggacctgcgg
acaggccgctgtgtcatgtttctggagggtcatttgaaggaaatctacagcatcaacttt
tcccccaacggctttaatgtggcaacaggaagtggggatcacacctgtaaggtgtgggac
ctgcgtcagaggaagtgtatctacaccatccctgcccatcagaatctcctgtcttctgtc
aaattccagcccactgacggtcactacctgttgactggggcgtacgacaacatggctaag
gtgtggacccaccctggctggtctccactgaagacgctggcaggtcacgagggcaaggtc
atgggtcttgatctgtctcctgacggacagttcatagcaacttgctcctatgaccgcacc
ttcaaactctggatgtccgaataa

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